Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00027 ATGGCTGAATGGGAGAAGTTGAGAATATTAGGGAAGGGGTCCTCTGCTATTGTCTACATTGCTACCATGTTTGCTCCAGAGGAATGCATAGGAAATGTGGTGGTTGTGAAGAGTTCAATGCCTCACTCAATAGACTTAATTAGGAAGGGGCCACTGTTTGAGAGTGAGGCAAGAATCTACACCATTATGCTTCTTAAAGGGCTTTCTTGCATTCATCAAGCTGGAGTTGTTCATTGTGATTTAAAGCCCGATAACATTCTTCTCTTTTCTTCATCTAAGAACGATGCAAAGGATCAACTCAAGATTGCAGATTTTGGATTGTCCAAGACTAAAGAAGAGATTATCAATGCTGAGTATTGGAATTTCAGGTTTAGAGGGACACCATTATACATGTCACCAGAATCAGTTAAGGGTCAGATTGAAACATCATTGGATATTTGGTCTCTTGGATGTATAGTCATAGAGATGATCACTGGGTTATATGTATGGAGGAACCCTCCAACTTTAAAGAAGATGATTCCAACTACAAATGAGATGATGTACAAGCTTGCTGTCCTTGAAGAAGCACCAAAGATACCTAATGGATTATTGGTTGACGATTGGTTCTGCATGTGTCACGTTGTTATTTCCTGTTCTGTTAATTGA 645 0.3938 MAEWEKLRILGKGSSAIVYIATMFAPEECIGNVVVVKSSMPHSIDLIRKGPLFESEARIYTIMLLKGLSCIHQAGVVHCDLKPDNILLFSSSKNDAKDQLKIADFGLSKTKEEIINAEYWNFRFRGTPLYMSPESVKGQIETSLDIWSLGCIVIEMITGLYVWRNPPTLKKMIPTTNEMMYKLAVLEEAPKIPNGLLVDDWFCMCHVVISCSVN 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00027 214 SUPERFAMILY Protein kinase-like (PK-like) 3 176 IPR011009 -
Gabi4248g00027 214 SMART serkin_6 4 202 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00027 214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Gabi4248g00027 214 Pfam Protein kinase domain 38 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4248g00027 214 ProSitePatterns Protein kinases ATP-binding region signature. 10 37 IPR017441 GO:0005524
Gabi4248g00027 214 Gene3D Transferase(Phosphotransferase) domain 1 42 203 - -
Gabi4248g00027 214 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 50 195 - -
Gabi4248g00027 214 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00027 Gabi-Chr4248 379148 380268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00027 54 196 MAP Kinase Kinase Kinase AT5G67080 40.278 6.37e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi4248g00027 Pkinase 3.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00027 - - gmx:102664043 230.72