Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4248g00020 ATGGCTGCTAGGAGTGAACACCAAACCGTTCCCCTTTCCGTGCTCCTAAAGCGTGAATTGGCGAACGAGAAAATTGAGAAACCTGAGATTCTTCATGGTCAAGCGTGCCAGAGCAAGAAAGGAGAGGATTTCACTCTGCTGAAGACGGAATGCCAGAGGGTGGTGGGTGATGGGGTCTCTACATATTCCGTTTTTGGAATATTTGATGGACACAATGGATCTGCTGCTGCTATTTATGCTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCGATTCCTTTGGATCTTAATAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTAGTTGCTGCCTTCGTAAAAACTGATAAAGATTTTCAACAGAAAGGACAAAAATCGGGAACTACTGTAACCTTTGTGATTATAGAAGGATGGGTTGTAACAGTTGCATCAGTTGGTGATTCCCGTTGTGTACTTGAATCTTCTGATGGTGGTATTTATTACTTGTCTGCAGATCATAGGCTAGAAACAAATGAAGAGGAGAGGGTGCGCATCACCTCTAGTGGGGGTGAGGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTTTCACGATCTATTGGAGATATGGATATTGGTGAATTTATTGTCCCTGTACCATATGTAAAGCAAGTGAAGCTGTCCACTGCCGGAGGCCGTCTTGTTATCTGCAGTGATGGTGTTTGGGATGCTCTACCTGCTGAAGTAGCCCTTGATTGTTGTCGTACCATGTCAGCAGAGGCTGCTGCACCACATATTGTTAAAGAAGCTTTGCAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTAGCATCGGAGAAGCCCCCTGCTTCTGTGCCACAATCGAAGAAGCCAGTAAAAGGAGTGCTCAAGTACGTCTTTCGTAAAAAGTCTTCTGATTCAGCAAACATTGACAAAGAATACATGGAGCCAGATGTAGTAGAGGAAATGTATGAGGAAGGATCTGCTATGCTTTCAGAGAGGTTAGATACGAAGTATCCACTCTGCAATATGTTCAAGTTGTTTATGTGTGCAGTATGTCAGGTAGAGATAAAACCTGGAGAGGGGATTTCAATACATGAGGGTGCGCTTAACCCTCAAAGATTGCGTCCCTGGGATGGACCTTTCCTTTGCTTAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGATAGACTTAGCAGCGGAAGTGACGAGTGA 1284 0.4463 MAARSEHQTVPLSVLLKRELANEKIEKPEILHGQACQSKKGEDFTLLKTECQRVVGDGVSTYSVFGIFDGHNGSAAAIYAKENLLNNVLSAIPLDLNRDEWVAALPRALVAAFVKTDKDFQQKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGGIYYLSADHRLETNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDIGEFIVPVPYVKQVKLSTAGGRLVICSDGVWDALPAEVALDCCRTMSAEAAAPHIVKEALQAKGLRDDTTCIVVDILASEKPPASVPQSKKPVKGVLKYVFRKKSSDSANIDKEYMEPDVVEEMYEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPGEGISIHEGALNPQRLRPWDGPFLCLSCQEKKEAMEGKRSSDRLSSGSDE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4248g00020 427 Pfam Protein phosphatase 2C 53 279 IPR001932 -
Gabi4248g00020 427 ProSiteProfiles PPM-type phosphatase domain profile. 24 293 IPR001932 -
Gabi4248g00020 427 PANTHER PROTEIN PHOSPHATASE 32 292 IPR015655 GO:0004722|GO:0006470
Gabi4248g00020 427 FunFam probable protein phosphatase 2C 12 32 299 - -
Gabi4248g00020 427 SMART PP2C_4 21 291 IPR001932 -
Gabi4248g00020 427 SUPERFAMILY PP2C-like 38 293 IPR036457 -
Gabi4248g00020 427 CDD PP2Cc 39 293 IPR001932 -
Gabi4248g00020 427 Gene3D - 32 299 IPR036457 -
Gabi4248g00020 427 SMART PP2C_SIG_2 46 293 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4248g00020 Gabi-Chr4248 174403 179613 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4248g00020 1 426 PP2C-type Phosphatase Gene Family AT1G47380 78.505 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4248g00020 - - gmx:100816201 786.949