LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4244g00002	ATGAACGAGAAGGCCAACGTTACGAAGGAGCTTAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCATTCAATGGGAAACGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGGGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCCAAAAACACCTTCTGGACTGCGGGAAGAGAAAATTCCTTCACATAGGCAGAGACCTGCGGAAAGAAGTGGGCATGGTTATGCTACTATTTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTTCTGCTACAAGAATTAGTATTCCTGCACCTACCAGAGCACCTGAGCAGCTTGTTGAGAAAGCGGAACCAGTAGCACCACAACCACAAGCTGAAACATCAAAGCAGGTCACAGAAACAGCTCACAATACCCCTTCAAAAGTTGACTATGCTACGGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGCTCAGAGGCAGCTGGTTCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGGGTTGACAGCTGAGAAGACCAGTCCGCCGAAAGCTGTTGGGAGTACTCCCCAATCTGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCTATGACACCAAGCTTAGCTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATTATGAGCCTCTTTGAGAAGAGCAATATGGTATCTCCATTTTCTATGCATCAACAGCAGCTTGCAATGCTAGCACAGCAACAGTCTCTTCTTATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAAGTACCCTGCGGGTATACAACCACCTAGGCCCAATGTTCCTGTCCAAAATTGGCCAGCTACTGGCTACCCGATTTCTGGAGTAATACCCATGGGTGGTCAGGGAGAGCTTCAGAAATTTATGCAGAATCAGACTACGAACATGACTCCAACACATCCAGCAGGGAGTTCTGTTCAATATCCACCCTCTAGTTTCTATGCTATGGGGCAAGTTGCTCCAGTCAATGGTATGATGACAATGGGAGTGAGTAAACCTCATTCAGCAGCTCCGGTGTCATCATCCACTTCAAAGTCTACTAAAGAATATGATTTTTCCTCCCTAACGCAAGGGATGTTTGCGAAACCCTGA	1410	0.444	MNEKANVTKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPKTPSGLREEKIPSHRQRPAERSGHGYATISENTFEERKKIQPSNAISATRISIPAPTRAPEQLVEKAEPVAPQPQAETSKQVTETAHNTPSKVDYATDLFNMLSMDGPSENGSEAAGSTADDNNWAGFQSAAEGLTAEKTSPPKAVGSTPQSASGIEDLFKDSPSMTPSLAPEKPQKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTGGDPKYPAGIQPPRPNVPVQNWPATGYPISGVIPMGGQGELQKFMQNQTTNMTPTHPAGSSVQYPPSSFYAMGQVAPVNGMMTMGVSKPHSAAPVSSSTSKSTKEYDFSSLTQGMFAKP	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4244g00002	469	CDD	ArfGap	19	117	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	123	150	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	437	469	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	234	287	-	-
	Gabi4244g00002	469	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	468	IPR044520	GO:0005096
	Gabi4244g00002	469	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	123	152	-	-
	Gabi4244g00002	469	Gene3D	Arf GTPase activating protein	1	129	IPR038508	-
	Gabi4244g00002	469	FunFam	stromal membrane-associated protein 1 isoform X1	1	128	-	-
	Gabi4244g00002	469	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	124	IPR037278	-
	Gabi4244g00002	469	Pfam	Putative GTPase activating protein for Arf	17	123	IPR001164	GO:0005096
	Gabi4244g00002	469	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Gabi4244g00002	469	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Gabi4244g00002	469	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Gabi4244g00002	469	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	130	IPR001164	GO:0005096
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	188	219	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	234	306	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	203	219	-	-
	Gabi4244g00002	469	MobiDBLite	consensus disorder prediction	440	460	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4244g00002	Gabi-Chr4244	24670	33262	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4244g00002	16	123	C2H2 Transcription Factor Family	AT4G05330	49.138	7.26e-30	117

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4244g00002	K12486		-	gmx:100789910	732.635