LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4244g00001	ATGAACGAGAAGGCCAACGTTACGAAGGAGCTTAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATTTGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGTGTGCATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCATTCAATGGGAAACGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAGAATTTCATTCGGGCAAAGTATGAAGAGAAGAGATGGGTTCCAAGGGATGGGAATCCAAAAACACCTTCTGGACTGCGGGAAGAGAAAATTCCTTCACATAGGCAGAGACCTGCGGAAAGAAGTGGGCATGGTTATGCTACTATTTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTTCTGCTACAAGAATTAGTATTCCTGCACCTACCAGAGCACCTGAGCAGGTTACTCCTGTTACCAAATCTCAGCTTGTTGAGAAAGCGGAACCAGTAGCACCACAACCACAAGCTGAAACATCAAAGCAGGTCACAGAAACAGCTCACAATACCCCTTCAAAAGTTGACTATGCTACGGACCTTTTCAACATGTTGTCTATGGATGGCCCAAGTGAAAATGGCTCAGAGGCAGCTGGTTCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGGGTTGACAGCTGAGAAGACCAGTCCGCCGAAAGCTGTTGGGAGTACTCCCCAATCTGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTCTATGACACCAAGCTTAGCTCCAGAAAAACCACAGAAAGATGTGAAAAATGATATTATGAGCCTCTTTGAGAAGAGCAATATGGTATCTCCATTTTCTATGCATCAACAGCAGCTTGCAATGCTAGCACAGCAACAGTCTCTTCTTATGGCTGCTGCAGCTAAATCTACTGGTGGGGATCCCAAGTACCCTGCGGGTATACAACCACCTAGGCCCAATGTTCCTGTCCAAAATTGGCCAGCTACTGGCTACCCGATTTCTGGAGTAATACCCATGGGTGGTCAGGGAGAGCTTCAGAAATTTATGCAGAATCAGACTACGAACATGACTCCAACACATCCAGCAGGGAGTTCTGTTCAATATCCACCCTCTAGTTTCTATGCTATGGGGCAAGTTGCTCCAGTCAATGGTATGATGACAATGGGAGTGAGTAAACCTCATTCAGCAGCTCCGGTGTCATCATCCACTTCAAAGTCTACTAAAGAATATGATTTTTCCTCCCTAACGCAAGGGATGTTTGCGAAACCCTGA	1434	0.4435	MNEKANVTKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIHSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVPRDGNPKTPSGLREEKIPSHRQRPAERSGHGYATISENTFEERKKIQPSNAISATRISIPAPTRAPEQVTPVTKSQLVEKAEPVAPQPQAETSKQVTETAHNTPSKVDYATDLFNMLSMDGPSENGSEAAGSTADDNNWAGFQSAAEGLTAEKTSPPKAVGSTPQSASGIEDLFKDSPSMTPSLAPEKPQKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTGGDPKYPAGIQPPRPNVPVQNWPATGYPISGVIPMGGQGELQKFMQNQTTNMTPTHPAGSSVQYPPSSFYAMGQVAPVNGMMTMGVSKPHSAAPVSSSTSKSTKEYDFSSLTQGMFAKP	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4244g00001	477	CDD	ArfGap	19	117	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	123	150	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	183	227	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	445	477	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	242	295	-	-
	Gabi4244g00001	477	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	123	152	-	-
	Gabi4244g00001	477	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	476	IPR044520	GO:0005096
	Gabi4244g00001	477	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Gabi4244g00001	477	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Gabi4244g00001	477	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Gabi4244g00001	477	Pfam	Putative GTPase activating protein for Arf	17	123	IPR001164	GO:0005096
	Gabi4244g00001	477	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	130	IPR001164	GO:0005096
	Gabi4244g00001	477	FunFam	stromal membrane-associated protein 1 isoform X1	1	128	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	242	314	-	-
	Gabi4244g00001	477	Gene3D	Arf GTPase activating protein	1	129	IPR038508	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	211	227	-	-
	Gabi4244g00001	477	MobiDBLite	consensus disorder prediction	448	468	-	-
	Gabi4244g00001	477	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	124	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4244g00001	Gabi-Chr4244	24670	33262	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4244g00001	16	123	C2H2 Transcription Factor Family	AT4G05330	49.138	7.36e-30	117

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4244g00001	K12486		-	gmx:100789910	751.125