Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4243g00001 ATGTGGTTTATGATATCAGGTTCTAAACTTGTCTATGTTCTTATCTTTGGGTTTCTGGCTTTGAATTGTTTGGAAAAGTTTGGATCCAATGCTCAACTCATACCGCAAGGTGAAGTGAAAGCTCTCCAGACAATTTCGGATAAACTAAAGAACGTGAATTGGAAAGTCACTGAACGTTCCTGCATAGAGGATGGGGGATTTAATGGCAAAATCAATATAGATGATGACATTGTCAGAAATGTCACATGTGATTGCACTTTCGAAAGAAGCACCATTTGCCACGTTAACAACATCTTTCTCAAGGGTCAAAATATATCTGGAGTTGTGCCTAGAGAATTTGGAAATCTCACTCAACTAAAAGTACTTGACCTTACTCGCAACTATCTCAGTGGCTCAATTCCAACGAGTTTTTCTCACAACTCGCTTGTCATCTTGTCCCTTCTCGGAAACCGATTAAGTGGTCCAATTCCTACAGAAATTGGTGATATTGCTAGTTTGGAGGAGCTGATCTTAGAAAGTAATCTACTTGGAGGACCACTTCCTCCCAATCTCGGAAATTTGAGCAAGTTGAAGAGATTACTTCTTTCTGCAAATAATTTTACAGGGACAATACCAGAAACATTTAGCAATCTAAAGAATCTCACTGATTTTAGGATAGATGGAAGCAGTTTATCCGGACAGATACCCAACTTTATTGGCAACTTGACCAAACTTGAAAGATTGGATATGCAAGGAACATCTATGGAAGGCCCAATTCCTCCTACCATATCTGAGTTGAAACATTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACTATGACATTTCCTGATCTTAAGGATTTGAAAATTTTGAAAAGACTGGAATTGAGAAATTGCTTAATCACTGGTGGCATTCCAGATTACATTGGTGAAATGGCAAACTTAGTTACTTTAGACCTAAGCTTCAATATGTTGACTGGCTCAATCCCAAATTCAATTCAGGGATTGAAAAGGCTAGATTACATGTTTCTGACAAATAATTCTCTGAGCGGACCAATTCAAGACTGGATACTAAACTTCAAAATAAAGATAGATTTATCTTACAACAATTTTACAAAGTCCTCCGCAACTAGCTGCCAACTCTTGGATCTGAATTTGGCTTTAAGCCATTCTTCTTCCGCAATCACTCCGCATTCAACTTTTTGCTTGAAGAAAAACCTACCTTGTGCAGGAAAACCCCAGTATACCTCATTGTTTATAAACTGTGGAGGACCTGAGGTGGAGTTTGAGGGAAACAACTTCGTAGGCGACCTACAGCAAGATGGCATTTCAAACTTTGTTCTTAGAAATGAAGAACAATGGGCTTATAGTAGCACCGGAGTATATTTGGGAAATGTTGATGCAGATTATATAGCAAAAAATACATTTTCTTTGAATATTAGTGGCCCAGAGTATTACCAAAGTGCCCGCCTTGCCCCTCTTTCACTTAACTACTATGGCCTTTGTATGCTGAAGGGAAATTATAAAGTGAAGCTCCATTTTGCAGAGATAATGTTTTCTGATGACAAGACTTTTAGCAGTCTTGGAAGGCGTATATTTGATGTCTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTATAGAAGAAGCTGGTGGAGTTGGAAAGGGCATCACTAAAGAATTTGATGTTGATGTTGATGATAGCACCTTGGAAATTCACTTATACTGGGCAGGGAAAGGAACTACTGCCATTCCGGACAGAGGTGTATATGGACCTCTTATATCTGCTATCACAGTAACACCAAACTTTGAAATCCCTTCAAAAGGACTGTCTGTTGGAGCTATTGTTGGGATTGTTGCTGCATCATGTGTGCTTGTCATAGTGATACTGGTTGCCCTTTGGAAGATGGGTTTCCTTGGTGGGGAAGATACTAGAGACAAAGACCTTCTAGATCTGAAAACAGGTTATTTCAGCTTAAGACAAATTAAAGCAGCCACTAATAACTTTGACCCCACAAATAAAATAGGTGAAGGAGGATTTGGGCCAGTACACAAGGGTGTGCTATCAGATGGTGAAGTGATTGCTGTTAAGCAGCTCTCCTCCAAGTCAAAGCAAGGGAATCGTGAATTTGTTAATGAAATTGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAGTTGCTGCTAATATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTCTTTGGTCATCAAGAACAAAAGTTGCAATTGGACTGGCCCACAAGAATGAATATCTGTCTAGGGATAGCAAGGGGATTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTGCACAGGGACATTAAGGCAACCAATGTCTTGCTTGACAAGGATCTCAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAAAATACCCATATCAGCACACGGATAGCTGGAACCATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTCGGAATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTATATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTATTGGAATTGTTGGATCCAAGTCTTGGTTCAAGGTACTCACCAGAGGAAGCCATGAGAATGATGAGCTTGGCACTCTTGTGCACCAATCCGTCTCCGACTCTTAGACCATCTATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATCCAAGCACCAATAATCAAGCGCGGTGAGAATCACCAAGATGCAAGATTCAAAGCCTTTGAGTCGTTATCACAAGATAGCCAAACTCTTGTTTTGTCTACATTCTCACAAGAATGTATAGAGCATAGACACAAGTCAGTAGATGGACCATGGATTGACTCCTCCACATCTCTTCCAAGTGGGGATGATTATTCTTCAACCAGTAAACTTCTTTGA 3042 0.3961 MWFMISGSKLVYVLIFGFLALNCLEKFGSNAQLIPQGEVKALQTISDKLKNVNWKVTERSCIEDGGFNGKINIDDDIVRNVTCDCTFERSTICHVNNIFLKGQNISGVVPREFGNLTQLKVLDLTRNYLSGSIPTSFSHNSLVILSLLGNRLSGPIPTEIGDIASLEELILESNLLGGPLPPNLGNLSKLKRLLLSANNFTGTIPETFSNLKNLTDFRIDGSSLSGQIPNFIGNLTKLERLDMQGTSMEGPIPPTISELKHLTELRITDLNGPTMTFPDLKDLKILKRLELRNCLITGGIPDYIGEMANLVTLDLSFNMLTGSIPNSIQGLKRLDYMFLTNNSLSGPIQDWILNFKIKIDLSYNNFTKSSATSCQLLDLNLALSHSSSAITPHSTFCLKKNLPCAGKPQYTSLFINCGGPEVEFEGNNFVGDLQQDGISNFVLRNEEQWAYSSTGVYLGNVDADYIAKNTFSLNISGPEYYQSARLAPLSLNYYGLCMLKGNYKVKLHFAEIMFSDDKTFSSLGRRIFDVSIQGFKYLKDFNIIEEAGGVGKGITKEFDVDVDDSTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPNFEIPSKGLSVGAIVGIVAASCVLVIVILVALWKMGFLGGEDTRDKDLLDLKTGYFSLRQIKAATNNFDPTNKIGEGGFGPVHKGVLSDGEVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGHQEQKLQLDWPTRMNICLGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELLDPSLGSRYSPEEAMRMMSLALLCTNPSPTLRPSMSSVVSMLEGKTPIQAPIIKRGENHQDARFKAFESLSQDSQTLVLSTFSQECIEHRHKSVDGPWIDSSTSLPSGDDYSSTSKLL 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4243g00001 1013 Gene3D Ribonuclease Inhibitor 39 165 IPR032675 -
Gabi4243g00001 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 742 949 - -
Gabi4243g00001 1013 Gene3D - 409 599 - -
Gabi4243g00001 1013 MobiDBLite consensus disorder prediction 992 1013 - -
Gabi4243g00001 1013 Pfam Leucine rich repeat 189 246 IPR001611 GO:0005515
Gabi4243g00001 1013 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515
Gabi4243g00001 1013 Gene3D Phosphorylase Kinase; domain 1 637 741 - -
Gabi4243g00001 1013 Pfam Protein tyrosine and serine/threonine kinase 670 937 IPR001245 GO:0004672|GO:0006468
Gabi4243g00001 1013 Pfam Leucine Rich Repeat 118 139 IPR001611 GO:0005515
Gabi4243g00001 1013 CDD STKc_IRAK 672 939 - -
Gabi4243g00001 1013 Gene3D Ribonuclease Inhibitor 275 388 IPR032675 -
Gabi4243g00001 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 204 271 - -
Gabi4243g00001 1013 ProSiteProfiles Protein kinase domain profile. 666 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4243g00001 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Gabi4243g00001 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 968 - -
Gabi4243g00001 1013 SUPERFAMILY L domain-like 81 371 - -
Gabi4243g00001 1013 SMART LRR_typ_2 187 210 IPR003591 -
Gabi4243g00001 1013 SMART LRR_typ_2 116 139 IPR003591 -
Gabi4243g00001 1013 SMART LRR_typ_2 307 330 IPR003591 -
Gabi4243g00001 1013 Pfam Malectin domain 412 594 IPR021720 -
Gabi4243g00001 1013 SMART serkin_6 666 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4243g00001 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 410 599 - -
Gabi4243g00001 1013 Gene3D Transferase(Phosphotransferase) domain 1 742 956 - -
Gabi4243g00001 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 38 203 - -
Gabi4243g00001 1013 Gene3D Ribonuclease Inhibitor 170 274 IPR032675 -
Gabi4243g00001 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 741 - -
Gabi4243g00001 1013 SUPERFAMILY Protein kinase-like (PK-like) 651 938 IPR011009 -
Gabi4243g00001 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 272 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4243g00001 Gabi-Chr4243 10419 21969 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4243g00001 1 1004 Receptor kinase-like Gene Family AT1G53440 62.242 0.0 1243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4243g00001 PK_Tyr_Ser-Thr 3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4243g00001 - - gmx:100815226 1674.45