Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00085 ATGACGTCTCTAATCATGTTTGTTCTCAGTATTGTTTCACAAACAATGGTGTATATGACACCAGCTACAGCTGCTCTTGCTTTGAGTTCAGATTCTGATAAGCAAGCTTTGCTTGCTTTAAAGGAAAAGCTTACCAATGGCAAGCCTGATTCTCTGCCATCATGGAATGAGTCTCTGCATTTCTGTGAATGGGAGGGTGTTAGATGCGGTCATCGTCACATGAGAGTCTCTGTTTTGCATTTGAAGAATCAAAATTGGGGTGGTACACTTGGACCAGCATTGGGGAATCTAACCTTCCTCAGAAAACTCAATCTTTCTAATATCAACTTGCGTGGGAAAATTCCCAAACAAGTTGGTCGTTTAAAGCGGTTGCAGGTTCTTGACTTGAGGACAAATAACCTCGGTGGTGAGGTTCCCATCGACCTTACTAACTGCTCAAATCTTCAGGTAATTTTCTTGTCGTACAATAACCTTACTGGAAAAATTCCCTCATGGTTTGGATCAATGACACAGCTTACTCAGTTGCATCTTGCTGTTAATAATCTAGTTGGTGTTATCTCACCTTCCTTGGGAAACCTTTCCTCACTCCAGAGCATATCACTTTCAAGAAACCATTTGGAAGGAAATATACCTCATGCTTTCGGTAGGTTGTCAAATTTGAAAGAGCTGTATCTGGGTTTAAATAGTTTGTCAGGTATTGTCCCTCCTTCTCTTTACAACCTTTCAAATATTCAAGATTTTGTTCTCGTAGAAAACCAGTTACTTGGCACTCTTCCATCAAATATGCAACTTGCTTTTCCAAATCTTCAAAAACTCTTGATTGGGGAGAACCAGTTCACTGGAACATTCCCATCTTCAATATCCAACCTCACCAGGTTACAATGGTTTGATATATACACAAATGGTTTTCGTGGGCCAATTCCTAACACATTGGGAAGCTTAAAGAAACTTCAAGTTTTTTACATTGGTAACAACAGTTTTGGGAGTGGAAGAGGTCACGATTTGGATTTCCTTTCCTCATTAACCAATTGTACTCAGTTGAAAGAACTTAATTTGGATTTCAATAAATTTGGTGGTGTGTTGCCAGATCTTATAGGCAACTTATCTACCAATCTCAATGAGCTTAGTATGGTGAATAATCAAATATCTGGAATGATACCCGAGGGAATTGGACAAATAATGGGCTTAACTAGCTTTAATATGCTAGGGAATTTCCTTGAGGGAACAATTCCAGATTCAATAGGAAAGCTTAAAAATCTAGTAAGATTGGGCTTGCAAGAAAACCAATTATCTGGTAATATTCCTACAGCTATTGGCAATCTTACTATGTTATCTGAAGTTTATCTAGGCGCCAATAAATTTAAAGGAAGCATTCCGCCTACCCTCAAATATTGCACCCAGATGCAGTCATTTAGTGTTTATGGCAACAACTTAAGTGGTGATATACCTAATCAAACATTTGACCATCTAGAAGGTTTAATAATTCTTGGGTTATCCCACAACTCTTTCACTGGCTATATTCCTTCAGAGTTTGGAAACTTAAAGCACCTTTCAAAATTAGGTCTATTCTCAAATAAGTTGTCTGGTGAAATTCCTGTGGAACTTGGTGCTTGTTTGGCATTGGCTGAGCTCGACCTGGACGAAAACTTCTTCAGTGGAAGTATACCTTCCTTCTTGGGCTCTTTAATATCCCTTGAGATCTTAAACCTTTCCAACAACAACTTCTCAAGCACAATCCCCCGTGAGCTAGAAAGTCTGAGATATTTGAATACTTTGGACCTGTCTTTTAATCATCTTTATGGTGAAGTTCCCATAGGAGGTGTCTTTAAAAATGTCACAGCGCTTTCGCTCATTGGAAATAAGGATCTTTGTGGTGGGATAACTCAACTGAAGTTGCCTGCATGCCCTAGGTCACCCTTGAAGAAACACAAGAGGTTTCTTAAAAAAAAAGTTATCATCGTCATTGTAATTGTTGGGGTTTTGGTCGTTTCAATAGTTCTTATCAGAATGTACTATCTCAGGAAAAATCCCAAAAAGTTATCGTCTTCATCATCTATGAAAAATAGGTACTTGAGGGTTTCTTATGGAGAGTTATATGAAGCAACCAACGGATTTTCTTCATCTAATTTAATAGGCACAGGAAGCTATGGTTCTGTGTACAGAGGAACTCTTCTCCATTTTGAAAGACCAGTTGCTGTTAAGGTGTTGAATCTTGAAACACGTGGGGCAGCAAAGAGTTTCATAGCTGAGTGCCAATCTCTGGGAAAGATAAAGCACCGAAATCTTCTCAACATCCTGACGTGCTGCTCGAGTGTTGATTATAATGGCGGCGACTTCAAGGCTATAGTTTTTGAGTTCATGCCTAATGGAAGTCTAGAAAGGTTGTTGCACAACAATGAAGAGAACGAGTCTAGAAATATGAAACTCAACTTTACACATAGGTTAAATATTGCTATTGATGTAGCTCATGCATTGGAATATCTTCACCATGATTTCGGGCAAGTTGTAGTTCACTGTGATATTAAGCCAAGCAACGTTCTTCTTGACGATGAAATTGTTGCCCATTTGGGAGACTTTGGGTTGGCTAGACTACTTAATGGGGCCACATGGCATTCAAGTAGAGATCAAGTTAGTTCCTCTATGATTAAAGGAACCATTGGATATGTTCCCCCAGAGTATGGAGCAGGTGTCCCAGTATCACCACAAGGAGATATCTACAGCTACGGAATTCTTCTGTTGGAGATGCTCACTGGAATGAAACCAACAGAAAGCTTGTTTGGTGAGGATCTAAGCCTACATAAGTTCTGCGAGATGGCAATTCCAGAAGGAATCACTGAGATAGTGGATTCATGTTTGCTTATTCCATTTGCTGATGACAACAACATTAGGGAAAGTCTGATATCTTTTGCTAGGATTGGGGTTGCATGTTCTGTTGATTTCCCCGCACATCGAATGGGCATGAAGGATGTAATAGTGGAGTTGCATGCAATTAAACAGAAGCTGCCATTGTTGTGA 3015 0.395 MTSLIMFVLSIVSQTMVYMTPATAALALSSDSDKQALLALKEKLTNGKPDSLPSWNESLHFCEWEGVRCGHRHMRVSVLHLKNQNWGGTLGPALGNLTFLRKLNLSNINLRGKIPKQVGRLKRLQVLDLRTNNLGGEVPIDLTNCSNLQVIFLSYNNLTGKIPSWFGSMTQLTQLHLAVNNLVGVISPSLGNLSSLQSISLSRNHLEGNIPHAFGRLSNLKELYLGLNSLSGIVPPSLYNLSNIQDFVLVENQLLGTLPSNMQLAFPNLQKLLIGENQFTGTFPSSISNLTRLQWFDIYTNGFRGPIPNTLGSLKKLQVFYIGNNSFGSGRGHDLDFLSSLTNCTQLKELNLDFNKFGGVLPDLIGNLSTNLNELSMVNNQISGMIPEGIGQIMGLTSFNMLGNFLEGTIPDSIGKLKNLVRLGLQENQLSGNIPTAIGNLTMLSEVYLGANKFKGSIPPTLKYCTQMQSFSVYGNNLSGDIPNQTFDHLEGLIILGLSHNSFTGYIPSEFGNLKHLSKLGLFSNKLSGEIPVELGACLALAELDLDENFFSGSIPSFLGSLISLEILNLSNNNFSSTIPRELESLRYLNTLDLSFNHLYGEVPIGGVFKNVTALSLIGNKDLCGGITQLKLPACPRSPLKKHKRFLKKKVIIVIVIVGVLVVSIVLIRMYYLRKNPKKLSSSSSMKNRYLRVSYGELYEATNGFSSSNLIGTGSYGSVYRGTLLHFERPVAVKVLNLETRGAAKSFIAECQSLGKIKHRNLLNILTCCSSVDYNGGDFKAIVFEFMPNGSLERLLHNNEENESRNMKLNFTHRLNIAIDVAHALEYLHHDFGQVVVHCDIKPSNVLLDDEIVAHLGDFGLARLLNGATWHSSRDQVSSSMIKGTIGYVPPEYGAGVPVSPQGDIYSYGILLLEMLTGMKPTESLFGEDLSLHKFCEMAIPEGITEIVDSCLLIPFADDNNIRESLISFARIGVACSVDFPAHRMGMKDVIVELHAIKQKLPLL 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00085 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 333 641 - -
Gabi4240g00085 1004 FunFam Leucine-rich repeat receptor protein kinase EMS1 145 236 - -
Gabi4240g00085 1004 SMART LRR_typ_2 417 441 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 562 586 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 514 538 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 490 513 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 344 367 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 193 216 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 121 145 IPR003591 -
Gabi4240g00085 1004 SMART LRR_typ_2 217 241 IPR003591 -
Gabi4240g00085 1004 SUPERFAMILY L domain-like 370 625 - -
Gabi4240g00085 1004 SUPERFAMILY L domain-like 30 327 - -
Gabi4240g00085 1004 Gene3D Phosphorylase Kinase; domain 1 668 786 - -
Gabi4240g00085 1004 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 237 330 - -
Gabi4240g00085 1004 SUPERFAMILY Protein kinase-like (PK-like) 680 999 IPR011009 -
Gabi4240g00085 1004 SMART serkin_6 705 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4240g00085 1004 FunFam LRR receptor-like serine/threonine-protein kinase EFR 676 786 - -
Gabi4240g00085 1004 ProSitePatterns Protein kinases ATP-binding region signature. 711 734 IPR017441 GO:0005524
Gabi4240g00085 1004 Gene3D Transferase(Phosphotransferase) domain 1 787 1002 - -
Gabi4240g00085 1004 ProSiteProfiles Leucine-rich repeat profile. 564 587 IPR001611 GO:0005515
Gabi4240g00085 1004 Pfam Leucine rich repeat 143 182 IPR001611 GO:0005515
Gabi4240g00085 1004 Pfam Leucine rich repeat 476 527 IPR001611 GO:0005515
Gabi4240g00085 1004 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Gabi4240g00085 1004 Pfam Leucine rich repeat 541 599 IPR001611 GO:0005515
Gabi4240g00085 1004 Gene3D Ribonuclease Inhibitor 331 643 IPR032675 -
Gabi4240g00085 1004 Gene3D Ribonuclease Inhibitor 194 330 IPR032675 -
Gabi4240g00085 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Gabi4240g00085 1004 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Gabi4240g00085 1004 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Gabi4240g00085 1004 Pfam Protein kinase domain 707 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4240g00085 1004 ProSiteProfiles Protein kinase domain profile. 705 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4240g00085 1004 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 229 994 - -
Gabi4240g00085 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 787 1003 - -
Gabi4240g00085 1004 FunFam Leucine-rich repeat receptor-like kinase 33 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00085 Gabi-Chr4240 782480 785892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00085 27 1001 Receptor kinase-like Gene Family AT3G47570 43.117 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4240g00085 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00085 - - gmx:100777490 1351.65