Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00080 ATGGCTTCCACTTATCGTGACCGCACGTCGGAGTTCCGGTCATTGTCTGAGACTCTGAAGAAGAAGATTGCGCCGGGGCCGCCCCCAAATCAACCCGAAAATGCTCCCTCTACATCCCATTCCAGATCCGAATTCAACCGGAAAGCCTCACGAATCGGGTTGGGAATCCATGAAACCTCTCAGAAAATTGCGAGGCTCGCTCAGCTGGCGAAGAAATCATCCATGTTTAATGATCCGATTGTGGAGATACAAGAATTGACAGCTTTGATTAAGAACGACATAACGGCGTTGAACTCAGCTCTTTCGGATTTGCAAACAATTCAGAACATGGGTATAGCTGATGGCAATTACTCGGATGATATGATTGTGCATTCAACTGCAGTTTGTGATGACTTGAAGAACAAGCTTATGGGGGCCACAAAGAACCTTCAAGATGTATTGACTACTAGGACAGAGAATATCAAGGCTCATGAGAATAGGAAACAGATATTTTCCAAGAATGCATCGAGAGAGAACCCTTTCCAGCATCCGATGAAGCCAGCCACCGAGCCTCCTCCTTGGTCAAATTCATCAAATGCATCTGAGGATTTGCAACAAACATCAGCATCACCGTCAAATGGAGTTCCAGTTGGAAATCAACTCAGACGAAGGTTAGCTGTGGATAACACTCCATCCCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTTCCTCGGCAAGAAAATTATGCTCAAAGTCGGGCAACTTCTCTGCACAATGTGGAGTCTACTATCACAGAACTTAGCGGGATCTTCACGCATTTGGCTACGATGGTTGCCCATCAAGGGGAACTAGCTATCAGGATTGATGACAACATGGATGAGTCATTGGCTAATGTTGAAGGAGCTCACAGCTCTTTATTGAGGCATCTCAATCAAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGCCGTTCTTATACTTTTCCTGATGATCTTCATATTCTTTGTGGCCTAA 1002 0.4461 MASTYRDRTSEFRSLSETLKKKIAPGPPPNQPENAPSTSHSRSEFNRKASRIGLGIHETSQKIARLAQLAKKSSMFNDPIVEIQELTALIKNDITALNSALSDLQTIQNMGIADGNYSDDMIVHSTAVCDDLKNKLMGATKNLQDVLTTRTENIKAHENRKQIFSKNASRENPFQHPMKPATEPPPWSNSSNASEDLQQTSASPSNGVPVGNQLRRRLAVDNTPSQQMEMSMVQQVVPRQENYAQSRATSLHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAVLILFLMIFIFFVA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00080 333 Gene3D - 38 296 - -
Gabi4240g00080 333 Pfam SNARE domain 278 329 IPR000727 -
Gabi4240g00080 333 CDD SNARE_syntaxin5 244 329 - -
Gabi4240g00080 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 241 303 IPR000727 -
Gabi4240g00080 333 PANTHER SYNTAXIN 41 327 IPR045242 -
Gabi4240g00080 333 MobiDBLite consensus disorder prediction 1 45 - -
Gabi4240g00080 333 SMART tSNARE_6 236 303 IPR000727 -
Gabi4240g00080 333 MobiDBLite consensus disorder prediction 185 210 - -
Gabi4240g00080 333 SUPERFAMILY t-snare proteins 41 296 IPR010989 GO:0016020|GO:0016192
Gabi4240g00080 333 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Gabi4240g00080 333 ProSitePatterns Syntaxin / epimorphin family signature. 247 286 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gabi4240g00080 333 MobiDBLite consensus disorder prediction 153 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00080 Gabi-Chr4240 702632 706655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00080 1 333 SNARE and Associated Proteins AT5G05760 67.953 2.58e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00080 K08490 - gmx:100777383 526.554