Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00078 ATGGCGGTGAAACCTACAAAGGCTGAGAAGAAGATCGCTTACGATTCGAAGCTATGCCAGCTTCTGGATATGTATTCACAGATCCTGGTCGTGAACGCCGATAACGTCGGATCCAACCAGCTCCAGAGCATTCGACATGGATTACGTGGCGACTCGGTGGTTCTCATGGGGAAAAACACGATGATGAAGCGCTCTGTTCGGATTCACGCTGAAAAAACAGGAAACAACGCATTTCTCAACCTGATTCCCCTTCTTGTCGGCAACGTGGGATTGATTTTCACAAAAGGTGACTTGAAGGAGGTTAGCGAAGAGGTTGCCAAGTACAAGGTGGGAGCTCCTGCCCGTGTTGGTCTGGTTGCTCCAATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTTGATCCCTCGCAGACCTCTTTCTTCCAGGTGCTCAATATTCCAACCAAGATTAACAAGGGTACTGTTGAAATCATTACCCCTGTTGAACTGATTAAGAAAGGAGACAAGGTCGGCTCTTCTGAAGCTGCATTGCTTGCCAAACTCGGTATTAGGCCTTTCTCATATGGGCTTGTTGTACTATCCGTGTATGATAATGGTTCAGTCTTTAGCCCTGATGTCCTCGACCTTACTGAGGATGACCTCATGGAGAAGTTTGCTATTGGTGTCTCAATGGTTACATCTTTGTCATTGGCCGTTGGATACCCAACTCTTGCAGCCGCACCACACATGTTTGTGAATGCCTACAAGAACGTTCTTGCTGTTGCAGTTGCGACAGAATATTCTTTCCCCCAGGCAGACGAGGTTAAGGAGTTCTTAAAGGACCCGAGTAAATTTGCTGTAGCTGCTGTTGCAGCACCTGCTGCAGCTGCTGCTGCTGCCCCAGCTGCTGCTGCTGCCAAGGAAGAGGAAAAGAAGGACGAGCCAGCTGAAGAATCTGATGATGACATGGGTTTCGGTTTGTTTGACTAA 969 0.483 MAVKPTKAEKKIAYDSKLCQLLDMYSQILVVNADNVGSNQLQSIRHGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPDVLDLTEDDLMEKFAIGVSMVTSLSLAVGYPTLAAAPHMFVNAYKNVLAVAVATEYSFPQADEVKEFLKDPSKFAVAAVAAPAAAAAAAPAAAAAKEEEKKDEPAEESDDDMGFGLFD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00078 322 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Gabi4240g00078 322 Pfam Ribosomal protein L10 7 108 IPR001790 -
Gabi4240g00078 322 CDD Ribosomal_P0_L10e 9 185 - -
Gabi4240g00078 322 MobiDBLite consensus disorder prediction 296 322 - -
Gabi4240g00078 322 Gene3D - 6 209 IPR043141 -
Gabi4240g00078 322 MobiDBLite consensus disorder prediction 307 322 - -
Gabi4240g00078 322 FunFam 60S acidic ribosomal protein P0 113 186 - -
Gabi4240g00078 322 Gene3D - 114 185 IPR043164 -
Gabi4240g00078 322 PIRSF L10E 1 322 IPR030670 GO:0042254
Gabi4240g00078 322 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 304 - -
Gabi4240g00078 322 Pfam 60s Acidic ribosomal protein 234 321 - -
Gabi4240g00078 322 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00078 Gabi-Chr4240 693672 696447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00078 1 321 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 84.424 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00078 K02941 - jre:108991896 529.635