Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00071 ATGGAAGGGAAAGAGCAAGACGTTTCGTTGGGAGCCAACAAGTTTCCGGAGAGGCAGCCTATCGGTACGGCGGCTCAGAGCCAGGACGACGAAGGCAAGGACTACCAGGAGCCACCACCGGCGCCGTTGTTTGAGCCCTCCGAGCTAACATCATGGTCCTTCTACAGAGCTGGTATAGCAGAGTTCGTAGCCACTTTTCTGTTCCTCTACATCACCATCTTGACCGTCATGGGCGTCAGCAAGTCCGACTCCAAGTGCAAATCTGTCGGTATTCAAGGGATCGCTTGGTCTTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGAATCTCAGGGGGTCACATAAACCCGGCCGTGACGTTTGGTTTGTTCTTGGCGAGGAAGTTGTCGTTGACTAGAGCGGTGTTCTATATGGTGATGCAGGTCCTGGGTGCTATCTGTGGCGCCGGTGTGGTTAAGGGTTTTGAGGGAAAAGTCACGTACGGCCTGAAAAACGGTGGTGCTAACTTTGTAGCCCCTGGTTACACCAAAGGTGACGGGCTTGGTGCTGAGATTGTTGGCACCTTTATTCTTGTCTACACCGTCTTCTCAGCCACCGATGCTAAGCGTAGCGCCAGAGACTCTCATGTTCCTATTTTGGCACCCTTGCCTATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGTATTAACCCTGCTCGCAGTCTCGGTGCTGCCATCGTCTTCAACAAACACCTTGGCTGGCATGATCACTGGATCTTCTGGGTGGGACCATTCATCGGAGCAGCTCTTGCAGCTCTCTACCATGTAGTCGTAATCCGAGCCATTCCCTTCAAGTCCAAGTGA 873 0.5349 MEGKEQDVSLGANKFPERQPIGTAAQSQDDEGKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVSKSDSKCKSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQVLGAICGAGVVKGFEGKVTYGLKNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKHLGWHDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00071 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 286 IPR034294 -
Gabi4240g00071 290 NCBIfam MIP family channel protein 60 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 135 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 56 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 PRINTS Major intrinsic protein family signature 98 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 Pfam Major intrinsic protein 48 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 Gene3D Glycerol uptake facilitator protein. 41 288 IPR023271 -
Gabi4240g00071 290 ProSitePatterns MIP family signature. 116 124 IPR022357 -
Gabi4240g00071 290 CDD MIP 56 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4240g00071 290 FunFam Probable aquaporin PIP1-2 41 290 - -
Gabi4240g00071 290 MobiDBLite consensus disorder prediction 1 40 - -
Gabi4240g00071 290 SUPERFAMILY Aquaporin-like 48 282 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00071 Gabi-Chr4240 654855 656439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00071 1 290 Major Intrinsic Protein MIP AT4G23400 83.793 2.30e-168 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00071 K09872 - gmx:100791447 539.65