Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00069 ATGGACGAGGGTATGTCAGGCTTTTGTATTAGATCTGGAAGTGTCCGTGATAAAAGTGGCAGCACTGGCACTAAGTGTGGGCGTTGGAATCCCACCACTGAACAGGTTAAACTTCTTACTGAACTCTTCAGGTCTGGGCTCCGTACACCAAGCACTGATCAGATTCAAAAAATCTCTACTCAGCTTAGCTTTTATGGTAAGATAGAGAGCAAGAATGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAGCGTCGTAAGGTTTCCTTTGATAAGAAGGATGTTATTCGTAGAGAAAACTCTATCAATGCTTCCACACAAAGTCTTGCTGAGATGTATCAAGTTTCAGAGCCTGATAAGGTGATTGAGACTCTTCAACTGTTCCCCCTGAACTCCTATGGTGAATCAGAATCAGAGAACCTGAGAATGCATGCAAATGAAAAATGGGATAATATGATGTTTTCATACACAATGGGAGAACAAATGGAGCATCCGCCATTAGACCTGCGCTTGAGCTTTCTGTAA 534 0.4232 MDEGMSGFCIRSGSVRDKSGSTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDKKDVIRRENSINASTQSLAEMYQVSEPDKVIETLQLFPLNSYGESESENLRMHANEKWDNMMFSYTMGEQMEHPPLDLRLSFL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00069 177 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 16 108 IPR044555 GO:0003700|GO:0099402
Gabi4240g00069 177 SMART HOX_1 24 91 IPR001356 GO:0003677
Gabi4240g00069 177 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Gabi4240g00069 177 Gene3D - 25 93 - -
Gabi4240g00069 177 FunFam WUSCHEL-related homeobox 11 25 93 - -
Gabi4240g00069 177 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Gabi4240g00069 177 Pfam Homeodomain 26 86 IPR001356 GO:0003677
Gabi4240g00069 177 CDD homeodomain 28 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00069 Gabi-Chr4240 639644 640275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00069 8 177 Wox Gene Family AT3G11260 54.787 2.24e-62 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi4240g00069 Homeodomain 5.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00069 - - pvu:PHAVU_008G226100g 310.457