Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00068 ATGGATGTGATAAAGACGCAGCAGATATCATGGAGAGCGATAGAGAAGGTGATAGTTCACCCTTTGGTGTTGCTGAGCATAGTCGATAACTACAACAGGGTCGCCAAGGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTTGGTTCCTCTTTCAAAGGCACCGTTGACGTTACCAACAGCTACGCCGTTCCTTTTGAAGAAGATGAGAAAGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCGATGTTTTCCATGTTTAAGAGAATCAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAACTTCGAGAGAATGACCTCGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAGCCGAAGGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAGAGCCAAAAGGTCTTTGTACATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACAATTAGCACCCTTGCGACAGAGGTAAGTGCAAAACTAACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTACCTTGATCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGATGTATTCAATCTGCTACCAAATCTTAATGTCACTGATCTGATCAAGGCTTTCGCAGTGAAAACGAATGATATGATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTTCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGACTCTAAATCAGTGACGGTACCAACTACAGCTGGAAGTTAA 933 0.4202 MDVIKTQQISWRAIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDEKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPTTAGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00068 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Gabi4240g00068 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gabi4240g00068 310 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Gabi4240g00068 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Gabi4240g00068 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 290 - -
Gabi4240g00068 310 Gene3D Cytidine Deaminase, domain 2 10 194 - -
Gabi4240g00068 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Gabi4240g00068 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00068 Gabi-Chr4240 623888 627662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00068 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 1.06e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00068 K03038 - gmx:100790393 589.726