Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00067 ATGGATGTGATAAAGACGCAGCAGATATCATGGAGAGCGATAGAGAAGGTGATAGTTCACCCTTTGGTGTTGCTGAGCATAGTCGATAACTACAACAGGGTCGCCAAGGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTTGGTTCCTCTTTCAAAGGCACCGTTGACGTTACCAACAGCTACGCCGTTCCTTTTGAAGAAGATGAGAAAGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCGATGTTTTCCATGTTTAAGAGAATCAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAACTTCGAGAGAATGACCTCGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAGCCGAAGGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAAGAGAATGCCACTCAGAAGAGCCAAAAGGTCTTTGTACATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACAATTAGCACCCTTGCGACAGAGGTAAGTGCAAAACTAACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAGATAAGAAGTTACCTTGATCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATCTGCAGGATGTATTCAATCTGCTACCAAATCTTAATGTCACTGATCTGATCAAGGCTTTCGCAGTGAAAACGAATGATATGATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTTCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGCAGAAGACTCTAAATCAGTGACGGTACCAACTACAGCTGGAAGTTAA 924 0.421 MDVIKTQQISWRAIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDEKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKSVTVPTTAGS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00067 307 CDD MPN_RPN7_8 15 292 IPR033858 GO:0005838
Gabi4240g00067 307 Gene3D Cytidine Deaminase, domain 2 10 191 - -
Gabi4240g00067 307 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gabi4240g00067 307 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 191 - -
Gabi4240g00067 307 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gabi4240g00067 307 ProSiteProfiles MPN domain profile. 17 151 IPR037518 -
Gabi4240g00067 307 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 287 - -
Gabi4240g00067 307 Pfam Maintenance of mitochondrial structure and function 171 282 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00067 Gabi-Chr4240 623888 627664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00067 19 245 Eukaryotic Initiation Factors Gene Family AT2G39990 29.437 3.35e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00067 K03038 - gmx:100790393 578.941