Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00060 ATGGAATTGGAAACCCTCTATGCCCCTTGTTTTATGTCAAGTTCAAATTGGTTTGTCCAAGAGAGCCAGAGCCAAGAATGGAGTAGAGAAGATAATAAGAAGTTTGAAAGTGCCCTTGCCATATATGATAAGGACACCCCAGACAGATGGCTGAAGGTTGCAGCCATGATCCCTGGGAAGACTGTGTGTGATGTGATCAAGCAATACAGGGAATTGGAAGAAGATGTCACTGAAATAGAAGCAGGGCGTGTTCCAATTCCTGGGTATATTGCCTCTTCTTTCACCTTTGAGCTTGTTGACAACCACAATTATGATAGATGCAGAAGGAGGCCTTCAACTGTTAAGGGTTCTGATCAGGAGAGGAAGAAAGGGGTACCCTGGACTGAAGAGGAACACAAACGTTTTCTGAGGGGACTCCTAAAGTATGGTAAAGGGGACTGGAGAAATATCTCTCGTGATTTTGTTGTTACAAAAACTCCCACCCAAGTAGCTAGCCATGCCCAGAAGTACTACATAAGGCAAAAGGATTCTGGAGGAAAAGATAAAAGGAGACCAAGCATCCATGATATAACCACTGTTAATCTATCAGAAACTGCCACCTCAGATAAGAACAAGCCCATGTTATTCAATGTGTCTCCTATGCTTGCATCGCAGCAGAAGCTGACTAGCATGTCAAAAGTACAACTGGACTGGACTAGTCACTGCAATGATGGATCACTCATGATTTTCGAACCAAATTGTGATGACTTGTTTATTTCATCTTCATCTGATATCGCTTCCAAGACCCTGAAACTGCAAGGGGAGGATCTTTATGCCATGCTCAAAATTCCCGGTTTCAGGACAGCTTCTAGAGACTTCAATAAAGAAGCTGTTTTTGGTATTCATGCACTGTAA 894 0.4284 MELETLYAPCFMSSSNWFVQESQSQEWSREDNKKFESALAIYDKDTPDRWLKVAAMIPGKTVCDVIKQYRELEEDVTEIEAGRVPIPGYIASSFTFELVDNHNYDRCRRRPSTVKGSDQERKKGVPWTEEEHKRFLRGLLKYGKGDWRNISRDFVVTKTPTQVASHAQKYYIRQKDSGGKDKRRPSIHDITTVNLSETATSDKNKPMLFNVSPMLASQQKLTSMSKVQLDWTSHCNDGSLMIFEPNCDDLFISSSSDIASKTLKLQGEDLYAMLKIPGFRTASRDFNKEAVFGIHAL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00060 297 Gene3D - 125 176 - -
Gabi4240g00060 297 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 216 IPR043363 -
Gabi4240g00060 297 CDD SANT 26 72 IPR001005 -
Gabi4240g00060 297 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Gabi4240g00060 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Gabi4240g00060 297 FunFam Transcription factor SRM1 19 86 - -
Gabi4240g00060 297 SUPERFAMILY Homeodomain-like 121 176 IPR009057 -
Gabi4240g00060 297 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Gabi4240g00060 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Gabi4240g00060 297 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Gabi4240g00060 297 Gene3D - 19 86 - -
Gabi4240g00060 297 SMART sant 123 173 IPR001005 -
Gabi4240g00060 297 SMART sant 23 75 IPR001005 -
Gabi4240g00060 297 FunFam transcription factor MYB1R1 125 176 - -
Gabi4240g00060 297 CDD SANT 126 170 IPR001005 -
Gabi4240g00060 297 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00060 Gabi-Chr4240 498090 500372 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi4240g00060 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00060 - - ccaj:109813886 505.753