Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00044 ATGGCCGTAGCTCCGGCAATTCTCCAACCAACTCTCTTCTTCTTTTTCTTGTTCTTGTTGTTCATCACTTTCCCTTTGATATATTCCATGTCAGAAGCTGAAGCTTTGCTGAGTCTCAAAAACTCATTCTCGAATGCTGAAGCTCTTAATAGTTGGGTGGCTTTTTCTGTACCCTGTTCATCATGGGAAGGTGTTGTTTGCTACAATGGCTTTGTCACGGGGCTTCGCCTTGGAGGAATGGGGTTATCAGGGATAATAAATGTTGACGCGTTACTTGAACTCAAGGGTCTTCGAACTATCAGCATTGTGAACAATTCTTTCTCAGGTTCCATCCCAGAACTCAATCGAATAGGTTTCTTGAAAGCCATGTATTTTTCAGGGAATAAGTTTTCAGGGGATATTCCTCAGGATTACTTCCAGAGAATGAGGTCTTTGAAGAAATTGTGGCTATCTGATAATGAATTCACGGGCAATATTCCATCATCATTGGGTGAGATTCCTCATCTTATTGAGTTACATCTCGAAAACAACCAGTTTAGTGGAAGTATTCCAAATCTGGAGAACCCATCGTTGGTGGAAATCAATGTTTCCAACAACAAATTGGAAGGTGAAGTTCCACCTAGTTTGTTGAAATTTCATGAGAGCTCTTTTTCAGGGAATTCTGGTCTTTGTGGTGACAAGTTTGGTAAAACATGTGAAAAGGCAACAGAGGACACAAATCCTGTTAATGCACAAAATAATGCAGAGCATAACAACAACATTGGTAATGTGTCTGGTGGGACAAATGGAAGCAAGGGTAGGAATAGCACACTGCAAATTGTTGGCATTATAGCAGCAAGTGTAGTGCTTATCTCACTTATTGTATTTTTTATTGTGAGATCAAGGAGAAAGAAGGATAAGAATTTTGATATGATTGGACAACAAATTAACGATGGTTCAGTTGAAGTTCAAGTAACTGCACCTGTGAAAAGAGAAGTGGATTCAATGAAAAAAACATCAAGTAGGAGGGGATCTTCCCATGGAAAGGGAACGGGAGAACTTGTGATAGTGAATGATGAGAAGGGTATTTTTGGGTTACCAGATTTGATGAAGGCAGCCGCGGAAGTGCTAGGAAATGGAGGATTCGGATCATCTTACAAAGCTGTGATGGTTAATGGAGTGGCAGTGGTGGTGAAAAGGTCGAGAGAGATGAATGCATTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTTGGAAATCTAAAACACTGGAATATCTTGACCCCTTTGGCCTATCATTTCAGAAAGGATGAGAAACTAGTTATCTCTGAGTATGTTCCCAGAGGAAGTCTACTTTTTTTCCTTCATGGTGATAGGGGATCACATGCTGAACTTGATTGGCCTGCTCGTTTAAAAATTGTAAGAGGGATTGCTGAAGGGATGACTTATCTTCACACAGAACTTGCTTCCTCAAATCTACCCCATGGAAATCTCAAGTCTAGCAACGTTCTTCTTGGACCAGATTATGAACCAATGCTTGTAGATTACGGGTTTATCCATCTGGTTAACCCTTCCAGTGCTAGACAAGCACTATTTGCTTATAAGGCTCCAGAAGCAGCGCAACAAGGCCAAGTTTCGCCTATTTGTGATGTTTACTGTCTTGGGGTTGTGATACTTGAGATACTCACTGGAAAATTTCCTTCTCAATATCTTAGCAATGGAAAGGGTGGAACTGATGTAGTGGAATGGGTTAAATCAGCAATTACTGAGGGAAGGGAATCCGAACTACTCGATCCTGCAATTACAAGCTCTAGGAATTCACTAGGTGAAATGGCTCGACTCCTCCATATAGGTGCTGCTTGCACTGAGAGTAACCCTCAACAACGATTAGACATGGTGGAAGCCATTAGAAGGATAGAGGAGATAAAAACCGAGGGTAGCAGAGAATCAAGAACAATAGAGGTCTTACCATCTCTCAGAGATGGTTATGCAGACTCTCATGTATTTGATACCCAAGGCCAAGGGCACGTCGAACAATCACGTAGGAGACATGGATCAGACAGTGGAAGCCAGGAATATTTTGAATTTGGCATCTCCTAA 2082 0.4145 MAVAPAILQPTLFFFFLFLLFITFPLIYSMSEAEALLSLKNSFSNAEALNSWVAFSVPCSSWEGVVCYNGFVTGLRLGGMGLSGIINVDALLELKGLRTISIVNNSFSGSIPELNRIGFLKAMYFSGNKFSGDIPQDYFQRMRSLKKLWLSDNEFTGNIPSSLGEIPHLIELHLENNQFSGSIPNLENPSLVEINVSNNKLEGEVPPSLLKFHESSFSGNSGLCGDKFGKTCEKATEDTNPVNAQNNAEHNNNIGNVSGGTNGSKGRNSTLQIVGIIAASVVLISLIVFFIVRSRRKKDKNFDMIGQQINDGSVEVQVTAPVKREVDSMKKTSSRRGSSHGKGTGELVIVNDEKGIFGLPDLMKAAAEVLGNGGFGSSYKAVMVNGVAVVVKRSREMNALEKDGFDAEMRKLGNLKHWNILTPLAYHFRKDEKLVISEYVPRGSLLFFLHGDRGSHAELDWPARLKIVRGIAEGMTYLHTELASSNLPHGNLKSSNVLLGPDYEPMLVDYGFIHLVNPSSARQALFAYKAPEAAQQGQVSPICDVYCLGVVILEILTGKFPSQYLSNGKGGTDVVEWVKSAITEGRESELLDPAITSSRNSLGEMARLLHIGAACTESNPQQRLDMVEAIRRIEEIKTEGSRESRTIEVLPSLRDGYADSHVFDTQGQGHVEQSRRRHGSDSGSQEYFEFGIS 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00044 693 MobiDBLite consensus disorder prediction 241 264 - -
Gabi4240g00044 693 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 639 IPR046959 -
Gabi4240g00044 693 Gene3D Transferase(Phosphotransferase) domain 1 440 651 - -
Gabi4240g00044 693 SUPERFAMILY L domain-like 51 211 - -
Gabi4240g00044 693 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Gabi4240g00044 693 Gene3D Ribonuclease Inhibitor 29 187 IPR032675 -
Gabi4240g00044 693 SUPERFAMILY Protein kinase-like (PK-like) 368 633 IPR011009 -
Gabi4240g00044 693 Gene3D Ribonuclease Inhibitor 190 225 IPR032675 -
Gabi4240g00044 693 MobiDBLite consensus disorder prediction 325 344 - -
Gabi4240g00044 693 Pfam Protein kinase domain 368 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4240g00044 693 MobiDBLite consensus disorder prediction 664 693 - -
Gabi4240g00044 693 ProSiteProfiles Protein kinase domain profile. 364 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4240g00044 693 FunFam Nuclear pore complex protein NUP107 29 185 - -
Gabi4240g00044 693 Gene3D Phosphorylase Kinase; domain 1 344 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00044 Gabi-Chr4240 406172 408463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00044 8 636 Receptor kinase-like Gene Family AT3G42880 45.789 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi4240g00044 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00044 - - gmx:100814059 915.605