Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00043 ATGACCGAAGAAGACCGCTCCGTCGAGCCAACCGCTCGCAATGGAGTCGCAAACACGGAACTCATCGGCGGAAGCAGCGGCGGAGAGGTGTTGGAGCTTGCTGGCGGTGATGCTGAGGTATCGGTGGTCGGTGACTGTTATGTCGCCGGTAAAGTGAAGGGGCCTTGGTCTCCCGAGGAAGACGCAGTGCTGAGCCGATTGGTGGAACAGTTCGGGGCGAGGAATTGGAGCATGATAGCCCGAGGAGTTCCCGGGAGGTCCGGTAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTCTGTAAAACGCAAGCCTTTTACTGATGAAGAGGATAGTATCATTGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGTAATTGCAAGGCTTCTTCCAGGTAGAACAGATAATGCCATTAAGAACCACTGGAATTCTACACTGAAACGCAGGTGTGTGGAACTGGGTAGATATGTTCCAGCACATGCTGATGTGTTGGAAAATGGTAGCTTTGAGAAAACAAAGGCATCATCTGAAGAAACCATGTCAATCGGGGATATCAATTCATTGAATCGAGCAGATGTTAGAAATGTCGTGATGGATGGTGAAATTAAACAGTGTGAAGATAAAATTCCAAGAAAAGATGGTGCTGAAGTGGAGGGACATCCTACCCTTTGTCGACCAGTAGCACGTGTTAGTGCATTTAATGTTTATAATCCTCCTGGCAGGCCAACAACTGCATCATGTTCAAAGATGTTTCCAAGGCAGAGCCCTTTGATCCAACCACCCAAACCAGACGTAGGAGCCTGCAAGTTATTTGATGGTATTGGATGTGAGCCCATGATTCCATTGCAATGCGGTCATGGCTGCTGTGCAGCAGAGTTGGGGGAAAGCCATTCTCATGGTTCACTATTAGGTCCTGAGTTTGTTGACTATTTGGAGTCCCCCTCTTTCTCAAGTCATGAATTGATTTCGATTGCTACAGACTTAAACAATATGGCTTGGATCAAGAGTGGCCTCGAGAATTGTGGTGCCGTAGTAACTGAGAATACTGCAAACTTCACAGCATCCCAAGGGGCTGCCACTGTCTCACAAACAAGCTTCTCAGGACAAAGTTTAAAGAATGATTACATGCAATTTGAGGAGGGACCTGGCAAGATTTTGGGTGCAATGCAAGAAATGTTATCAACAAAGATGCCAAGGCAACATTTTGCAATGCCTGCAGAAGTATGA 1239 0.4754 MTEEDRSVEPTARNGVANTELIGGSSGGEVLELAGGDAEVSVVGDCYVAGKVKGPWSPEEDAVLSRLVEQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPSVKRKPFTDEEDSIIVSAHAIHGNKWAVIARLLPGRTDNAIKNHWNSTLKRRCVELGRYVPAHADVLENGSFEKTKASSEETMSIGDINSLNRADVRNVVMDGEIKQCEDKIPRKDGAEVEGHPTLCRPVARVSAFNVYNPPGRPTTASCSKMFPRQSPLIQPPKPDVGACKLFDGIGCEPMIPLQCGHGCCAAELGESHSHGSLLGPEFVDYLESPSFSSHELISIATDLNNMAWIKSGLENCGAVVTENTANFTASQGAATVSQTSFSGQSLKNDYMQFEEGPGKILGAMQEMLSTKMPRQHFAMPAEV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00043 412 SUPERFAMILY Homeodomain-like 50 146 IPR009057 -
Gabi4240g00043 412 CDD SANT 55 97 IPR001005 -
Gabi4240g00043 412 Pfam Myb-like DNA-binding domain 56 114 - -
Gabi4240g00043 412 CDD SANT 107 150 IPR001005 -
Gabi4240g00043 412 ProSiteProfiles Myb-like domain profile. 53 99 IPR001005 -
Gabi4240g00043 412 FunFam Transcription factor MYB44 107 153 - -
Gabi4240g00043 412 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4240g00043 412 ProSiteProfiles Myb-like domain profile. 100 150 IPR001005 -
Gabi4240g00043 412 FunFam MYB transcription factor 53 104 - -
Gabi4240g00043 412 Gene3D - 52 104 - -
Gabi4240g00043 412 Gene3D - 107 153 - -
Gabi4240g00043 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 99 IPR017930 -
Gabi4240g00043 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 154 IPR017930 -
Gabi4240g00043 412 SMART sant 52 101 IPR001005 -
Gabi4240g00043 412 SMART sant 104 152 IPR001005 -
Gabi4240g00043 412 PANTHER MYB PROTEIN-RELATED 53 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00043 Gabi-Chr4240 391554 395882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00043 1 380 MYB Transcription Factor Family AT3G55730 45.592 2.45e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4240g00043 Myb_DNA-bind_6 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00043 K09422 - gmx:100781228 622.854