Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00042 ATGTTGGTTAGTGAGGACGAGTGTCATGCTGTTGTTGACATAGACAATGTCTGTCATCGGAGCTTGGTCGGCGGCGGAGCCACTGAAGGGTGTTCTGAAGCCGGAGACAGGTCAGATGAGGAGCAAAGATCCTCCCATGATTCTAGTACCGAGATTGTGGGAGTGTCTGAAAAAGAGAGAGGATCCTCTGCATCAGAGTGTTCTGTGGATGTGGATCTGGACGGTGCATTTCATGATGTCAAGTTGCATTTGGCTAAGGTTGAGAGGGATTGTAGGATTTGTCATCTCAGCATGGATATGACCAATCATGAATCTGGGACTCCCATTGAGCTGGGATGCTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAGTGTGCTGAGGCTTGGTTCAAAATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCAATTGCACGCAATGTAGCTGGTGCTATTGAAGTTCAAATGACAGAACAATGGAATGAAGCAAATGATGCTTCCATGGTACCACCAACTGGACCTGCACCCCCTCCAGAAACTCGAAATTTCTGGCAGGGCCACCGTTTTTTGAATTTCCTGCTAGCCTGTATGGTATTTGCCTTTGTCATATCTTGGCTTTTTCACTTCAATGTGCCCTCTTGA 645 0.4667 MLVSEDECHAVVDIDNVCHRSLVGGGATEGCSEAGDRSDEEQRSSHDSSTEIVGVSEKERGSSASECSVDVDLDGAFHDVKLHLAKVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEVQMTEQWNEANDASMVPPTGPAPPPETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00042 214 SUPERFAMILY RING/U-box 88 145 - -
Gabi4240g00042 214 MobiDBLite consensus disorder prediction 33 47 - -
Gabi4240g00042 214 MobiDBLite consensus disorder prediction 28 61 - -
Gabi4240g00042 214 PANTHER ZINC FINGER, RING-CH-TYPE 16 213 - -
Gabi4240g00042 214 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270
Gabi4240g00042 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 151 IPR013083 -
Gabi4240g00042 214 SMART ringv_2 90 143 IPR011016 GO:0008270
Gabi4240g00042 214 Pfam RING-variant domain 91 142 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00042 Gabi-Chr4240 380322 385001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00042 36 214 C3H Transcription Factor Family AT5G05830 61.667 3.51e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00042 - - gmx:100818979 351.288