Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00030 ATTTCTCCCAATGCATCTCCTTATAAAGGCCGTGATCCTTCTCTGCTACAATCCTTCCCAACCTTTCTCTATGCCTCCGTTAAGGATCTTCACAAAGACAAGTATAGCCTCGAATGCGCTATTTGCTTGTTGGAGTTCGAGGAAGATAGCATGATGCGCTTGTTGACAGTTTGTTGCCATGTCTTCCATCAAGAATGCATTGATCTCTGGCTTAGTTCACACAAGACATGCCCTGTTTGTCGTACGGATCTTGATTCACCAACCAACGAAACGCGAAAGTCTCATGAACTCGGCGAGGACTATCTTCAAGCAGAGGAAGAGAGAAGGAATGAAGTGTGTATTGACGATGTAAAGGAAGGGGAAGATCAAAGAGATCAAAGAAACGATGATGATGTGCATGTTTCAATGATGTGCTTTTTTTCTTTTGTGTTTCTTTGTTCTAAATTTCCAACAAAATATACGTTGAGATTGCCGGAACATGTAGCGGTGAAAATTGTAAGAGGGCACAACTACACCAAGAGTTGTTCAAGTTACAATGAGATGGCAAGGCCTGTTGCACCTTGTAACAAGGGTTCACCGCAGTGA 585 0.4274 ISPNASPYKGRDPSLLQSFPTFLYASVKDLHKDKYSLECAICLLEFEEDSMMRLLTVCCHVFHQECIDLWLSSHKTCPVCRTDLDSPTNETRKSHELGEDYLQAEEERRNEVCIDDVKEGEDQRDQRNDDDVHVSMMCFFSFVFLCSKFPTKYTLRLPEHVAVKIVRGHNYTKSCSSYNEMARPVAPCNKGSPQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00030 194 SMART ring_2 39 80 IPR001841 -
Gabi4240g00030 194 SUPERFAMILY RING/U-box 18 89 - -
Gabi4240g00030 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
Gabi4240g00030 194 Pfam Ring finger domain 38 81 IPR001841 -
Gabi4240g00030 194 PANTHER RING FINGER DOMAIN-CONTAINING 4 89 - -
Gabi4240g00030 194 ProSiteProfiles Zinc finger RING-type profile. 39 81 IPR001841 -
Gabi4240g00030 194 FunFam E3 ubiquitin-protein ligase ATL6 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00030 Gabi-Chr4240 224685 227293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00030 9 84 Rapid Response to Elicitors AT2G35000 53.947 1.05e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00030 - - ccaj:109800443 221.861