Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00029 ATGGGTGATCATCCTAAGGACATGGACTCCACATCCTTACCTTCTCTTCATATGGCCATGGCTCAAAAGATCCTTGGCAGTGATTTTGCACCAGAAGCTGTACTTCACAGCTACAAGAGCTTTAATGGGTTCGTCATGAAGTTAACAGATGAGGAAGCGGAAAGAATGGCAGAAATGGACACTGTTGTCTCTGTTTTCCCAAACAAAAAGAATCATCTTCACACAACAAGATCGTGGGACTTCCTAGGCTTTCCCCAGCAAGTCAAAAGAACAAGTATTGAGAGTGACATAATTGTTGGAGTATTAGACTCAGGAATTTCGCCAGATTCTGAGAGTTTCAGTGACAAAGGATTTGGTCCACCACCAAGCAAATGGAAGGGTTCATGCCTTAACTTTACCTGCAACAACAAAGTGATTGGTGCAAAATACTTTAATATCGGAAGTAAATATACCAAAGAGGACATAGAATCTCCTAGGGATACAGAAGGGCACGGGTCACACTGTGCATCAACAATTGCTGGAAACTTTGTTAACCATGCAAGTCTACTAGGCTTTGCCAGCGGAACAGCCCGAGGAGGAGTTCCATCAGCACGAATTGCTGTGTACAAAATAATTTGGGAATCTGGTGGTTCAGAAGCTGACACACTTGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGACTTGATTTCTACATCAACGGGACCAACTGGCATAGTACACTATGAATATTTTGGTCATGCAATTAATATAGGAAGTTTCCATGCAATGAAAAGAGGCATATTGACGTCAAATTCTGCTGGTAATTTGGGGCCGGAGCTTTACTCTATGACAATTTATCCCCCTTGGTTACTTTCTGTGGCTGCTACCACTATTAACAGAATGTTCCTTACCAAGCTTCAATTGGGCAATGACATGGTTTATGAGGGGGTGTCAATTAACACATTTGATCTCAAAAGCAAAATGTTTCCCCTGTTTTTTTCTGCACAGGACAATTCCTCATCCGGGATTTGCAGCGAGAAGACTTTGGATAAACGTTTGGTGGAGGGAAAGATCGTTTTATGTGAAGGCTGGCACAATGTTACAGACGTTGGGTTTTTGTCTGGTGCGGCTGGTGTTATTGTTGCAGGCATTGGTGGGAAAGACCTCCCCGGCACATTTGCCCTGCCTGCCACTGTTCTCACTGTTAACGACTTAAAACTCGTAAAATCTTACATTGCTTCGGCGGGGTATAGCAAAAATGCAACAGCCACTATATTCAGGAGTGATGAAGTCAATGATTCGTCAGCACCTTACGTAGCTTCGTTCTCATCAAGAGGTCCAAATCCAATTACTCCAGACATTCTTAAGCCTGATCTCGCTGCCCCAGGTGTTAATATTATAGCTGCATATTCTCCAATGTCCCCAATTTCAGATGTTGAAGGTGACGAAAGACTAGTAAAATATAATATAATTTCTGGCACTTCAATGGCTTGTCCTCATGCTGCTGGGGCAGCTGCATATGTCAAATCATTTCATCCCAGTTGGTCTCCTGCTATGATCAAGTCTGCCTTGATGACCACAGCTACCCCAATGAGTGCTGCTCTTAATCCTGAAGCTGAATTTGCATATGGGGCGGGGCAAATTAATCCACTTAAGGCAGCAAATCCTGGTTTAGTATATGATATTAGCGAAGCAGATTATATCAAGTTCTTATGCGGTGAGGGGTATACCAATGAAAAACTCAGAGTACTCACTCAAGATCATGCTAAGTGCAGCAAAAAAGCTAACGAGTTAGCTGTTTACGAGCTTAATCTCCCATCATTTGCTCTTAAAGTAAATGCCCATTTCTATCGTGTTTTCCATCGAACAGTTACAAATGTGGGATCAGCAACATCTAGTTATAAAGCCAAATTGATGTTTCCATCTTTCCTGGATATTGAAGTGAAACCAGATGTTCTGAACTTCACATCTATTGGGCAGAAAAAGTATTTCTATGTTATAATTGCTGGGAAGATTAATGTGGAAATAACCTCTGCCTCTTTGGTTTGGGATGATGGCAATTTTCAAGTTAGAAGTCCAATTGTAATATATGGAGATCCTTGA 2085 0.4187 MGDHPKDMDSTSLPSLHMAMAQKILGSDFAPEAVLHSYKSFNGFVMKLTDEEAERMAEMDTVVSVFPNKKNHLHTTRSWDFLGFPQQVKRTSIESDIIVGVLDSGISPDSESFSDKGFGPPPSKWKGSCLNFTCNNKVIGAKYFNIGSKYTKEDIESPRDTEGHGSHCASTIAGNFVNHASLLGFASGTARGGVPSARIAVYKIIWESGGSEADTLAAFDEAIADGVDLISTSTGPTGIVHYEYFGHAINIGSFHAMKRGILTSNSAGNLGPELYSMTIYPPWLLSVAATTINRMFLTKLQLGNDMVYEGVSINTFDLKSKMFPLFFSAQDNSSSGICSEKTLDKRLVEGKIVLCEGWHNVTDVGFLSGAAGVIVAGIGGKDLPGTFALPATVLTVNDLKLVKSYIASAGYSKNATATIFRSDEVNDSSAPYVASFSSRGPNPITPDILKPDLAAPGVNIIAAYSPMSPISDVEGDERLVKYNIISGTSMACPHAAGAAAYVKSFHPSWSPAMIKSALMTTATPMSAALNPEAEFAYGAGQINPLKAANPGLVYDISEADYIKFLCGEGYTNEKLRVLTQDHAKCSKKANELAVYELNLPSFALKVNAHFYRVFHRTVTNVGSATSSYKAKLMFPSFLDIEVKPDVLNFTSIGQKKYFYVIIAGKINVEITSASLVWDDGNFQVRSPIVIYGDP 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00029 694 Gene3D Peptidase S8/S53 domain 96 561 IPR036852 GO:0004252|GO:0006508
Gabi4240g00029 694 PRINTS Subtilisin serine protease family (S8) signature 160 173 IPR015500 -
Gabi4240g00029 694 PRINTS Subtilisin serine protease family (S8) signature 94 113 IPR015500 -
Gabi4240g00029 694 PRINTS Subtilisin serine protease family (S8) signature 486 502 IPR015500 -
Gabi4240g00029 694 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 99 109 IPR023827 -
Gabi4240g00029 694 Pfam Peptidase inhibitor I9 6 74 IPR010259 -
Gabi4240g00029 694 SUPERFAMILY Subtilisin-like 73 552 IPR036852 GO:0004252|GO:0006508
Gabi4240g00029 694 ProSitePatterns Serine proteases, subtilase family, serine active site. 487 497 IPR023828 -
Gabi4240g00029 694 Pfam Subtilase family 95 540 IPR000209 GO:0006508|GO:0008236
Gabi4240g00029 694 Gene3D - 565 692 - -
Gabi4240g00029 694 ProSiteProfiles Serine proteases, subtilase domain profile. 78 548 - -
Gabi4240g00029 694 Pfam Fibronectin type-III domain 596 690 IPR041469 -
Gabi4240g00029 694 Gene3D - 293 426 - -
Gabi4240g00029 694 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 74 IPR037045 -
Gabi4240g00029 694 CDD PA_subtilisin_like 300 419 - -
Gabi4240g00029 694 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 689 IPR045051 -
Gabi4240g00029 694 CDD Peptidases_S8_3 72 523 IPR034197 -
Gabi4240g00029 694 ProSitePatterns Serine proteases, subtilase family, histidine active site. 164 174 IPR022398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00029 Gabi-Chr4240 190369 195045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00029 1 691 Subtilisin-like Serine Gene Family AT3G46850 47.479 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00029 - - gmx:100815516 989.564