Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00027 ATGGTGATTCATGAGTCCCAAGGACCATGCAGTGATTTGAGAAACTGGGTTCCGATAGGTCCCTTTACCGGCTATGCTTCCATTTTAAAACGGTCAAGATTTTTGAAGCCTGCTCAACAGCTTCTTGAAGACTTGTGTGGTAGTGTTTGGGATCCTCCTCCAATGGATAGCTTAAGCGAAAATGACAATGATGAAGACCCCATCACTGGCATTAGTGGGGATGCAATCCAGCATCAGTGGAGGGACTCAAAACTCGCATGCATGCTAGAGGAGGTATACAAGAAGTATGCCCTGTACAGCCAGCATATGCAATCAGTGGTGGAATCATTTCAAAAAGTTGCTGGGCTTGGAAATGCCACTCCTTATATATCATTTGGTATGAAAACCATTTCTAAGCATTTTGGATGTTTGAAGCATGCTATTTATGATCAACTTCAGTTTACAAGCAAAACTACTCCTGCAGCTAACAATTCTGGTGAAAAGGAAATTTTTAAGTATTCCACATTTCTAAGTATTCCACACCCTGTCCAACCTATTTTGAGATCCCAAAGAGGGCTTCCAGATCATGCTGTAGCTTTGCTGAAGAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACGGATTCTGAAAAGGATATATTGGCTCAACAAACTGGTCTTTCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTTAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGCTTGGGGAACAGCAGGCTCAACCATTAGAAGTGAACCATAATGTAAGCATGCATGTTGCTGGCCCATTTGCTCCATTACACAAGCCCATATGA 834 0.4245 MVIHESQGPCSDLRNWVPIGPFTGYASILKRSRFLKPAQQLLEDLCGSVWDPPPMDSLSENDNDEDPITGISGDAIQHQWRDSKLACMLEEVYKKYALYSQHMQSVVESFQKVAGLGNATPYISFGMKTISKHFGCLKHAIYDQLQFTSKTTPAANNSGEKEIFKYSTFLSIPHPVQPILRSQRGLPDHAVALLKRWLFEHFLHPYPTDSEKDILAQQTGLSRCQVSNWFINARVRIWKPMVEEMHMLGEQQAQPLEVNHNVSMHVAGPFAPLHKPI 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00027 277 ProSiteProfiles 'Homeobox' domain profile. 177 240 IPR001356 GO:0003677
Gabi4240g00027 277 CDD homeodomain 181 241 IPR001356 GO:0003677
Gabi4240g00027 277 Pfam Homeobox KN domain 197 236 IPR008422 GO:0003677|GO:0006355
Gabi4240g00027 277 SUPERFAMILY Homeodomain-like 184 248 IPR009057 -
Gabi4240g00027 277 Gene3D - 180 252 - -
Gabi4240g00027 277 Pfam Associated with HOX 28 141 IPR006563 -
Gabi4240g00027 277 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 249 - -
Gabi4240g00027 277 SMART HOX_1 180 244 IPR001356 GO:0003677
Gabi4240g00027 277 SMART prehox3 23 143 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00027 Gabi-Chr4240 178252 179836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00027 14 248 Homeobox Transcription Factor Family AT5G02030 45.802 2.01e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi4240g00027 POX 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00027 - - adu:107457744 389.037