Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00023 ATGGCTCCTTCTTCAGATGTCAATCATCTTTCTCATCCATGTATATATGGGGATTTTATTTCTTCACACTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAGGCTTTTCAAAGGTGGGTCCAATAGAACAAGGGGTGGTCGTCATATGCATGAACCAGCTGAGGAAAACATGGTTCGGCGCGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTTGGCCATGCAATGGCACTTTCTTCAGCCGAAGATTTAAAGAGACCAAATGACCATCAAGGGTATGGTTGGGGGGCAGACATTGATGAAGATTATGCACCATATGCTCCTGTGCCATATTATCCCAACGAATATAGAAAAATATGTGGCAGCTGCAACCAGGAGATAATCTACGGAAATTGTTTGAGCTGCATGAATACTTATTTTCATCCAGAGTGCTTTCGCTGTCACTCTTGTCGTTACCCCATTTCTGAGCGTGAGTTTTCTTTGTCAGGGACGCATCCATATCACAAGTCCTGTTTTAAAGAGTTAACCCACCCAAAATGTGAAGTTTGCTACCAATTCATTCCTGTAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTACTGTCCATCTCATGAATATGATAATACAGCTCGCTGTTGTAGTTGTGAAAGATTGGAGCCTCGGAATATAAAATACTATAGACTGGAAGATGGACGGAGTTTGTGCTTAGAATGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAAATGAGAATAGATCAACAAGTTCCAATGCTTCTGGTTGAGAGAGAAGCACTTAATGAAGCTATTGTCGGGGAGAAGAATGGTATTCATCACTTACCAGAAACAAGAGGATTATGCCTTTCAGAAGAGCAGACAGTCACCAGTATACAAAAAAGTTCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAGCTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTGTATGGTCTTCCGAGGTTACTCACAGGTGCTATACTTGCCCATGAATTGATGCATGCCTGGTTACGCCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGCCAGGTTCTTTCATATATGTGGCTTGAGTCAGAGGTAATGCCAAGCTTTCAGAGCATGGCATCAACATCTACAGCTTCTTCTTCCTCCACCTCCTCCTCCAAGAAAGGTGTAAGGTCTCAAGCTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCCATGATTCTTCTCCAGCTTATGGCGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAACAAATATGGTTTGCGTCGTACCCTTGACCACATTCGTTTGACTGGTTTTTTCCCCGAGTGA 1476 0.4248 MAPSSDVNHLSHPCIYGDFISSHSERKSGFMKWLSRLFKGGSNRTRGGRHMHEPAEENMVRRAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNDHQGYGWGADIDEDYAPYAPVPYYPNEYRKICGSCNQEIIYGNCLSCMNTYFHPECFRCHSCRYPISEREFSLSGTHPYHKSCFKELTHPKCEVCYQFIPVNAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQVPMLLVEREALNEAIVGEKNGIHHLPETRGLCLSEEQTVTSIQKSSRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMASTSTASSSSTSSSKKGVRSQAENKLGEFFKNQIAHDSSPAYGGGFRAANEAVNKYGLRRTLDHIRLTGFFPE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00023 491 MobiDBLite consensus disorder prediction 46 80 - -
Gabi4240g00023 491 SMART lim_4 128 180 IPR001781 -
Gabi4240g00023 491 Pfam LIM domain 129 182 IPR001781 -
Gabi4240g00023 491 FunFam Protein DA1-related 2 118 182 - -
Gabi4240g00023 491 ProSitePatterns LIM zinc-binding domain signature. 129 163 IPR001781 -
Gabi4240g00023 491 PANTHER PROTEIN DA1-RELATED 2 33 490 IPR045218 -
Gabi4240g00023 491 CDD LIM_DA1 129 181 - -
Gabi4240g00023 491 ProSiteProfiles LIM domain profile. 127 187 IPR001781 -
Gabi4240g00023 491 Gene3D Cysteine Rich Protein 116 186 - -
Gabi4240g00023 491 Pfam Protein DA1 278 486 IPR022087 -
Gabi4240g00023 491 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00023 Gabi-Chr4240 165043 168891 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4240g00023 DA1-like 1.5e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00023 - - gmx:100784976 895.19