Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00022 ATGAGCACACAAGGACAAGGGATAGAGGAGGCGGTGCTGGATGACATAATCCGGCGACTCACGGAGGTCCGAATGGCCCGACCCGGAAAGCAGGTTCAGCTATCAGAGGCTGAGATCAAGCAGCTTTGCCACGCTTCCAGAGACATCTTCATTAGCCAGCCCAATTTGCTCGAACTCGAAGCCCCCATCAAGATTTGCGGTGACATTCATGGCCAGTACAGTGATTTGTTAAGGCTCTTTGAGTATGGTGGTTTGCCTCCTAGTGCTAATTATCTCTTTTTAGGAGATTATGTGGATCGTGGGAAGCAGAGCTTAGAAACTATTTGTCTTTTGCTTGCGTATAAAATCAAATATCCAGAAAACTTTTTCCTTCTGAGGGGCAATCATGAGTGTGCTTCCATTAATAGGATATATGGATTTTATGATGAATGTAAGCGAAGGTTTAATGTGAGGCTTTGGAAAGCCTTTACAGAGTGTTTTAACTTCCTTCCTGTGGCAGCTCTTATAGATGATAAAATATTGTGCATGCATGGTGGTCTTTCCCCTGAACTTACAAACTTGGATCAAATCAGGAATCTACCTCGCCCAACTGCTATTCCAGACTCTGGCTTGCTTTGTGATTTGCTTTGGTCTGATCCTGGTAGAGATGTGAAGGGTTGGGGTATGAATGACAGAGGAGTCTCCTACACCTTTGGCCCTGATAAGGTGGCTGAATTTTTGACAAAGCATGACTTGGACCTCATTTGCCGTGCTCATCAGGTTGTAGAGGATGGGTATGAATTCTTTGCCGACAGGAAACTTGTTACAATATTTTCAGCTCCAAACTACTGTGGTGAATTCGACAATGCTGGTGCAATGATGAGTGTGGATGATAACCTGATGTGCTCTTTCCAGATTCTTAAGCCTGCGGAGAAAAAAGTAAAGTTCATGATGTCAAACAAGATGTGA 948 0.4409 MSTQGQGIEEAVLDDIIRRLTEVRMARPGKQVQLSEAEIKQLCHASRDIFISQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKAFTECFNFLPVAALIDDKILCMHGGLSPELTNLDQIRNLPRPTAIPDSGLLCDLLWSDPGRDVKGWGMNDRGVSYTFGPDKVAEFLTKHDLDLICRAHQVVEDGYEFFADRKLVTIFSAPNYCGEFDNAGAMMSVDDNLMCSFQILKPAEKKVKFMMSNKM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00022 315 CDD MPP_PP1_PPKL 12 302 - -
Gabi4240g00022 315 SUPERFAMILY Metallo-dependent phosphatases 23 309 IPR029052 -
Gabi4240g00022 315 ProSitePatterns Serine/threonine specific protein phosphatases signature. 125 130 IPR006186 GO:0016787
Gabi4240g00022 315 FunFam Serine/threonine-protein phosphatase 60 313 - -
Gabi4240g00022 315 Pfam Calcineurin-like phosphoesterase 62 254 IPR004843 GO:0016787
Gabi4240g00022 315 Pfam Serine-threonine protein phosphatase N-terminal domain 13 60 IPR031675 -
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 62 89 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 91 118 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 187 214 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 266 282 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 158 184 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 244 264 IPR006186 GO:0016787
Gabi4240g00022 315 PRINTS Serine/threonine phosphatase family signature 124 148 IPR006186 GO:0016787
Gabi4240g00022 315 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 16 306 - -
Gabi4240g00022 315 Gene3D - 6 313 IPR029052 -
Gabi4240g00022 315 SMART pp2a_7 34 304 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00022 Gabi-Chr4240 142481 148458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00022 63 247 Calmodulin-binding Proteins AT5G63870 33.484 3.95e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00022 K06269 - gmx:100811593 622.854