Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4240g00001 ATGGAGGGATCTCAGTGCTTGATGTGGATGAAGAGAAAACAAATCCTGAAGTCACACCTTGAAGTACCAGTTGGAGATGGCAACAATTACTCATGGGAAGAAAGGGCTTTTGCAGAAGACGCGGCTAGGATACTTGGTGGTAGCATATGGCCTCCAAGATCTTACTCTTGTAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGAGGTCACATGAATGTTCACAGAAGGGACAGGGCTAGGCTCAAACAAAATCTTAGCCCTCATAATGAATCCCTTGATCATCATCATCATCATCATCACAAAGATGATCATTTGCTCAAGTCATTTGGTAATCATTTCTCTTCCCAGGTAGATTGTCATCTTAATCCTTATTCTAGCCCTAAAATAGGGTCTCCTAATTCACAAACAGAAGGGGTGGTCAATGCAAGAAAAGACAATTTTATTGGCTTGGGTTGTAATAATTATGTTGAGACAAGTTTGTCTGTGGGACTGACTTCCATGTTTGGCCAAAAATCACCAACCGTTCCTTGTGGGGATGAAGACATCAACAGTTGTAAAAGACTAAAGACTAGCATTTCTTCACTGCCCATCTTCCTGAAGCCATGTTCAAATGATCGACACTTGGCTTTCCAATCTGCAGAAATTGTACTTGGACTTAATCCTGTAATGGAAGATTTAGATCTTGAACTCAGGCTAGGGAAACAACAGAAAGTTAAGTAG 729 0.4088 MEGSQCLMWMKRKQILKSHLEVPVGDGNNYSWEERAFAEDAARILGGSIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQNLSPHNESLDHHHHHHHKDDHLLKSFGNHFSSQVDCHLNPYSSPKIGSPNSQTEGVVNARKDNFIGLGCNNYVETSLSVGLTSMFGQKSPTVPCGDEDINSCKRLKTSISSLPIFLKPCSNDRHLAFQSAEIVLGLNPVMEDLDLELRLGKQQKVK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4240g00001 242 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Gabi4240g00001 242 SMART c2h2final6 55 77 IPR013087 -
Gabi4240g00001 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Gabi4240g00001 242 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
Gabi4240g00001 242 PANTHER OS07G0101800 PROTEIN 27 238 - -
Gabi4240g00001 242 Gene3D Classic Zinc Finger 2 77 - -
Gabi4240g00001 242 Pfam C2H2-type zinc finger 55 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4240g00001 Gabi-Chr4240 7950 8741 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4240g00001 1 236 C2H2 Transcription Factor Family AT5G06070 37.052 2.58e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4240g00001 - - aprc:113851273 304.679