Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00070 ATGGACTTCAATGAAATCTCAGCTCCAATGTTGTTTTCTTCAGGATCGTTGAATACCCTTTTGAGTTCGATCCTTGGATTGCCCGTGTTGGAACTGGTGGCAATCTGTGCCAACTTGACTCTGCTTCTTCTGTTTCTCTTTATTTTCTCGGCCAGGAAGATACTTGTGTGTCTGTGGGGAAGAGTTCGATTCGGTAAGGACAATACTGAAGACAATGCCACCTCAATTCGTGCTAATGTTGATGGTGGAATACATGACGTTCGAATAGGTACATGGTTTAAGTTGTCAGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTGTTGGGGTTTGATGGGGTTGCTTTGATTACCGGAGGGACTAAAGGGAAGCCTGTGGATTTGTCTCTTCTTTCTGTGCCACTTGCACAGGGTTTAACTTGGGTTGTATTAAGCTTCTCGGCTTTGCATTGCAAATTCAAGGTTTCTGACAAGTTTCCAATTTTGTTGAGAGTTTCTTGGTTTTTGTTATTTGTTATTTGTTTGTGTACTTTATATGTTGATGGGAGAGGGTTTTGGATGGAAGGTTCCAAGCACCTACGTTCTCACGTTGTGGCTAATGTTGCTGTTACCCCTGCTCTTGCCTTCTTGTGTATTGCTGCAATTAGGGGTGTTACTGGTATACAAGTTTGTAGGAACTCTGAGGATCAACAGCCATTACTTGTTGAAGAAGAACCGGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGAGTTTTTAGCTTGGTCACTCTGTCTTGGCTGAACCCAATTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCCCTTGTTGCACCAAAAGATCGAGCCAAGACCAATTATAAGGTTTTGAATTCAAATTGGGAGAGGTTGAAGGCTGAAAACCCTTCTATTCAGCCTTCATTAGCTAGGGCAATTCTCCAGTCATTCTGGAAGGAGGCAGCTTGTAATGCCATCTTTGCTGGCGTCACTACTCTTGTCTCATATGTGGGTCCATACATGATAAGTTACTTCGTTGATTACTTGGTTGGTAAAGAGACTTTCCCTCATGAAGGGTATGTCCTTGCAGGGATATTCTTTGTTGCAAAGCTTGTGGAGACCTTGACAACTAGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTTAGGTCAGCTCTAACAGCAATGGTATATCATAAGGGTCTCAGATTATCAAGCATGGCCAAGCAAAATCACACAAGTGGGGAGATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTTGGGGACTACTCTTGGTATTTTCATGACATGTGGATGCTCCCTCTGCAGATTGTCCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTCCATTGCAACACTGATTGCTACAATCATTTCCATTGTTGCCACTGTTCCTGTGGCTAGGATCCAGGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGAATGAGAAAAACATCCGAGTGCCTGAGGAATATGAGGACTCTCAAGCTGCAAGCTTGGGAGGACAGATATCGAATAAAATTGGAGGAGATGCGTGGAATAGAGTTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGCTACTTCCATATTGTTGGGTGGTCAACTGACTGCAGGTGGTGTACTTTCTGCTTTAGCTACTTTCAGGATCCTCCAAGAACCTTTGAGAAATTTCCCGGACTTGGTGTCAACAATGGCTCAGACAAAGGTTTCTCTTGATCGAATATCTGATTTCTTGCTGCAAGAAGAATTACAGGAAGATGCAACTATTGTTTTGCCACAAGGCATTTCTAACATTGCTGTAGAAATTAAGGATGGTGTCTTCTGTTGGGACCCTTCTTTATCTTCTAGGCTTACTCTATCAGGGATACATGTCAAAGTTGAAAAAGGGATGCGTGTGGCTGTTTGCGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGAGTATGTGGCTCTGCTGCATATGTCTCCCAGTCCGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTCGGAAGCCGAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACATTTCTCACATGGTGATCAGACAATTATTGGTGATAGAGGTATAAACCTGAGTGGTGGACAGAGGCAGCGGGTTCAGCTAGCCCGAGCACTCTATCAAGATGCTGATATTTATCTGCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTATATATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATACTGGTTCTTAAAGAAGGCTGCATCATACAGGCAGGAAAGTATGATGATCTTTTAGGAGCAGGAACAGATTTTAAAACTCTAGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTTCTCACTCCTCTGAAGATTCGGATGAAAATTTATCCTTGGATGCACCTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAACGATATTGACAGTTTGGCAAAGGAAGTGCAAGATGGATCATCGGGTTCAGATAAAAAAGCAATTAAGGATAAGAAGAAAGCAAAAAGATCAAGAAAAAAACAGCTTGTTCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATAATTGCACAGGCATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCAGCCCAAAGTAACTCCCATGGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGTTCATGGTTTATATTTGTAAGGGCTGCTCTGGTGGCTACATTTGGTCTTGCAGCTGCACAGAAGCTATTTTTCAAGATGCTTAGAAGTGTTTTCAATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGGGTATCAGTTGACCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACTATACAGCTTATTGGTATTGTTAGTGTAATGACAGAAGTTACATGGCAAGTTTTGCTCTTAGTTGTCCCAATGGCCGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGAGAACTGGTCCGTATTGTAAGTATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCTTCCACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTATGCACGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGGATGGAGTTATTGTCAACCTTTGTATTTGCTTTCTGCATGGTGTTACTTGTGAGCTTTCCCCATGGAAGTATAGACCCAAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCCTATCGCGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATAATATCTATCGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAGGCACCAGCAATTATTGAAGATTCTCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATCAGAATAATTGATTTGAAGGTCCGTTACAAGGAGAATCTTCCTTTGGTGCTTCATGGAGTATCCTGCACATTTCCTGGTGGGAAGAACATTGGAATAGTTGGACGTACTGGTAGCGGCAAATCTACCTTGATTCAAGCATTATTCCGATTGGTCGAACCATCAAGTGGGAGTATCCTTATAGACAACATTAATATTTCAGAGATTGGCCTTCATGACCTACGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATTTGGGAGTTCATGAAAATGGAGATAACTGGAGCGTAG 4215 0.4221 MDFNEISAPMLFSSGSLNTLLSSILGLPVLELVAICANLTLLLLFLFIFSARKILVCLWGRVRFGKDNTEDNATSIRANVDGGIHDVRIGTWFKLSVLSCFYVLLVQVLVLGFDGVALITGGTKGKPVDLSLLSVPLAQGLTWVVLSFSALHCKFKVSDKFPILLRVSWFLLFVICLCTLYVDGRGFWMEGSKHLRSHVVANVAVTPALAFLCIAAIRGVTGIQVCRNSEDQQPLLVEEEPGCLKVTPYSDAGVFSLVTLSWLNPILSIGAKRPLELKDIPLVAPKDRAKTNYKVLNSNWERLKAENPSIQPSLARAILQSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDYLVGKETFPHEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYHKGLRLSSMAKQNHTSGEIVNYMAVDVQRVGDYSWYFHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVATVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRTLKLQAWEDRYRIKLEEMRGIEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISDFLLQEELQEDATIVLPQGISNIAVEIKDGVFCWDPSLSSRLTLSGIHVKVEKGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGTIEENILFGSRMDKAKYKNVLHACSLKKDLEHFSHGDQTIIGDRGINLSGGQRQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLGAGTDFKTLVSAHHEAIEAMDIPSHSSEDSDENLSLDAPVMTSKKSICSANDIDSLAKEVQDGSSGSDKKAIKDKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSWFIFVRAALVATFGLAAAQKLFFKMLRSVFNAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVSVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCYARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSSWPENGTIRIIDLKVRYKENLPLVLHGVSCTFPGGKNIGIVGRTGSGKSTLIQALFRLVEPSSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEFMKMEITGA 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00070 1404 SMART AAA_5 1313 1392 IPR003593 GO:0016887
Gabi4238g00070 1404 SMART AAA_5 669 850 IPR003593 GO:0016887
Gabi4238g00070 1404 MobiDBLite consensus disorder prediction 912 940 - -
Gabi4238g00070 1404 FunFam ABC transporter C family member 5 626 874 - -
Gabi4238g00070 1404 Pfam ABC transporter 660 794 IPR003439 GO:0005524
Gabi4238g00070 1404 FunFam ATP binding cassette subfamily C member 5 1270 1379 - -
Gabi4238g00070 1404 Pfam ABC transporter transmembrane region 331 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4238g00070 1404 Pfam ABC transporter transmembrane region 970 1212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4238g00070 1404 Pfam ABC transporter 1304 1397 IPR003439 GO:0005524
Gabi4238g00070 1404 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 249 1398 - -
Gabi4238g00070 1404 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Gabi4238g00070 1404 CDD ABC_6TM_ABCC_D2 968 1262 IPR044726 GO:0140359
Gabi4238g00070 1404 Gene3D - 1270 1401 IPR027417 -
Gabi4238g00070 1404 Coils Coil 286 306 - -
Gabi4238g00070 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 970 1240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4238g00070 1404 Coils Coil 922 942 - -
Gabi4238g00070 1404 SUPERFAMILY ABC transporter transmembrane region 319 619 IPR036640 GO:0005524|GO:0016020
Gabi4238g00070 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1278 1398 IPR027417 -
Gabi4238g00070 1404 FunFam ABC transporter C family member 5 931 1268 - -
Gabi4238g00070 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 864 IPR027417 -
Gabi4238g00070 1404 CDD ABC_6TM_ABCC_D1 328 615 IPR044746 GO:0140359
Gabi4238g00070 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 865 IPR003439 GO:0005524
Gabi4238g00070 1404 Gene3D - 636 870 IPR027417 -
Gabi4238g00070 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi4238g00070 1404 FunFam ABC transporter C family member 10 310 623 - -
Gabi4238g00070 1404 CDD ABCC_MRP_domain1 641 841 - -
Gabi4238g00070 1404 SUPERFAMILY ABC transporter transmembrane region 967 1267 IPR036640 GO:0005524|GO:0016020
Gabi4238g00070 1404 Gene3D ABC transporter type 1, transmembrane domain 304 624 IPR036640 GO:0005524|GO:0016020
Gabi4238g00070 1404 Gene3D ABC transporter type 1, transmembrane domain 929 1268 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00070 Gabi-Chr4238 585040 594316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00070 641 858 Calmodulin-binding Proteins AT2G36910 30.769 6.37e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00070 - - gmx:100790550 2377.05