Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00064 ATGAAGAAGAACAAGATGCAAATGAAAACCCAGTTTTTCATCTTCTTCTTCTGTTACATTGGTTGTTTTTCTTTTGGTTTTGCTGCCGGAGCAGATGATGAAGTGTCAGCTTTGCTTTCTATAAAAGCAGGTCTTGTTGATCCGTTGAACGCCCTGCAGAATTGGAAACTGATGGACGAAGCACTGGGAAAGGATGCAGCTCATTGTAACTGGACTGGTGTCAGATGCAACTCAGCTGCAGCAGTAGAGAAGCTTGACCTCTCACACAAGAATCTCAGCGGCAGTGTATCCGATGATATACAAAGGCTTAAAAGTCTTAGTACACTCAACTTGTCTTGCAATGCTTTTTCATCACAATTGCCAAGATCCATAGCCAATCTCACCACACTGAACATTCTTGATGTAAGCCAGAATTTCTTCCTTGGTGACTTTCCATTAGGCCTTGGAAGGGCATGGCGACTTACGACTTTAAATGCATCCAGCAATGAATTCTCAGGTTCTCTTCCTTGGGACCTTGGAAACGCCAGTTCCTTAGAGATGCTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCATTCAGTAACTTTCATAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACTGGGGAAATTCCTGGAGAGCTAGGACAGCTTTCATCACTGGAGTATATGATCCTTGGGTACAATGAATTTGAAGGTGGGATTCCAGAAGAGTTTGGAAATCTTACTAGTCTTAAATATCTTGATTTAGCAACAGCCAATCTTGGTGGTGAGATTCCAGCTGGATTGGGAAAGCTCAAGTTATTGAATACAGTTTTCTTATACAACAACAATTTTGAAGGAAGAATTCCACCAGAAATTGGCAACATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAAGAAAAATTCCAACTGAAATAAGTCAGCTGAAGAATTTAGAGCTTCTGAACTTCATGGGCAACCAGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGGATTTGCCTCAACTGGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGACCATTGCCTATTAACCTTGGCAAGAATTCACCATTACAATGGTTGGATGTATCATCCAATTCACTCTCTGGTGAGATTCCTGAAACTCTTTGCAGCCAAGGCAATCTCACCAAGCTTATACTTTTCAATAATGCCTTCACTGGTCCAATTCCATCTAGCCTAACAATGTGTCCATCCCTTGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGATAGTTCCCGTGGGTTTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTCTCTGGTGGAATTCCGGATGACATTGCTTCTTCCACATCCCTTTCTTTCATTGATCTCTCAAGAAACAATCTTCATTCTTCTCTTCCTTCCACCGTTCTTTCCATTCCAAACCTGCAAACTCTCATGGTCTCAAACAACAACATGGAAGGTGAAATCCCAGACCAATTCCAGGACTGTCCCTCGCTTACTGTTCTTGATCTCTCATCAAATCATTTCTCTGGAAGCATTCCAGCAAGCATCGCCTCATGTCAGAAATTGGTAAATCTGAACCTACAAAACAACCAATTGAGCGGTGAAATCCCAAAAGCATTAGCTAACATGCCTACATTGGCCATTCTTGATCTTTCCAACAATTCTCTGAGTGGTCAGATACCTGAAAGCTTTGGTGTTTCTCCAGCTCTGGAAGCATTCAATGTCTCGTACAATAAGCTCGAAGGTTCTGTCCCAGCAAATGGTATGCTAAGAACTATAAACCCGAATGATCTTGTGGGCAATGCTGGCCTATGTGACGGTGTCCTCCCTCCATGTGACCAAAAATCTGCGTACTCAACAAGGCATGGAAGCTCACATGCAAAGCACATTATTGTAGGATGGATCATAGGAATATCAACAATCTTAGCCATTGGGATTGCAATTTTGCTAGCAAGATCTTTATATGTAAGGTGGTACACTGATGGATTTTGCTTCAGAGAAAGATTTTATAAGAGTAGCAAAGGGTGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGAATGGGAGCTACTGGGGTTGTTTATAAGGCTGAGGTACCTCAATCAAGTACAGTTGTGGCAGTGAAAAAATTGTGGAGATCAGGAACTGATATTGAAGTAGGAAGCAGTGATGACCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGAAACATTGTTAGACTACTAGGATTTCTTCATAATGACACTGATGTGATGATAGTTTATGAATTTATGCACAATGGCAACCTAGGAGATGCCTTGCATGGTAGACAAGCAGCGACATTGCTTGTAGATTGGGTTTCAAGGTATAACATAGCTCTAGGAGTTGCACAAGGACTTGCTTATCTTCATCATGATTGTCATCCACCAATTATCCATCGAGACATCAAATCAAATAATATATTGCTAGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTAGCCAAGATGATGACCAGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAGACCTTTAGATGCAGGCTTTGGAGAGTCTGTAGACATAGTAGAATGGATTAGAAGGAAGATTAGAGACAACAAATCTCTGGAAGAAGCATTAGACCCCAATGTAGGAAATTGCAGGCATATTCTAGAAGAGATGCTTTTAGTTCTAAGAATAGCACTTCTTTGCACTGCCAAGTTCCCCAAGGACAGACCCACCATGAGGGATGTCATAATGATGCTTGGAGAGGCAAAACCTCGGAGAAAGAGTAGTGGCAACAATGAAACAGTTGCAGCTAACAACAAAGAGATACCAGTTTTTAGCACATCACCAGTTAATGGCCTTCTGTAG 3075 0.4189 MKKNKMQMKTQFFIFFFCYIGCFSFGFAAGADDEVSALLSIKAGLVDPLNALQNWKLMDEALGKDAAHCNWTGVRCNSAAAVEKLDLSHKNLSGSVSDDIQRLKSLSTLNLSCNAFSSQLPRSIANLTTLNILDVSQNFFLGDFPLGLGRAWRLTTLNASSNEFSGSLPWDLGNASSLEMLDLRGSFFEGSVPKSFSNFHKLKFLGLSGNNLTGEIPGELGQLSSLEYMILGYNEFEGGIPEEFGNLTSLKYLDLATANLGGEIPAGLGKLKLLNTVFLYNNNFEGRIPPEIGNMTSLQLLDLSDNMLSRKIPTEISQLKNLELLNFMGNQLSGPVPSGLGDLPQLEVLELWNNSLSGPLPINLGKNSPLQWLDVSSNSLSGEIPETLCSQGNLTKLILFNNAFTGPIPSSLTMCPSLVRVRIQNNFLSGIVPVGFGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNNLHSSLPSTVLSIPNLQTLMVSNNNMEGEIPDQFQDCPSLTVLDLSSNHFSGSIPASIASCQKLVNLNLQNNQLSGEIPKALANMPTLAILDLSNNSLSGQIPESFGVSPALEAFNVSYNKLEGSVPANGMLRTINPNDLVGNAGLCDGVLPPCDQKSAYSTRHGSSHAKHIIVGWIIGISTILAIGIAILLARSLYVRWYTDGFCFRERFYKSSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGATGVVYKAEVPQSSTVVAVKKLWRSGTDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLHNDTDVMIVYEFMHNGNLGDALHGRQAATLLVDWVSRYNIALGVAQGLAYLHHDCHPPIIHRDIKSNNILLDANLEARIADFGLAKMMTRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDAGFGESVDIVEWIRRKIRDNKSLEEALDPNVGNCRHILEEMLLVLRIALLCTAKFPKDRPTMRDVIMMLGEAKPRRKSSGNNETVAANNKEIPVFSTSPVNGLL 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00064 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 371 632 - -
Gabi4238g00064 1024 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 181 984 - -
Gabi4238g00064 1024 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Gabi4238g00064 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 187 287 - -
Gabi4238g00064 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 31 186 - -
Gabi4238g00064 1024 FunFam MDIS1-interacting receptor like kinase 1 713 797 - -
Gabi4238g00064 1024 SUPERFAMILY RNI-like 84 429 - -
Gabi4238g00064 1024 SMART serkin_6 713 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00064 1024 SMART LRR_typ_2 247 271 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 487 510 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 103 127 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 439 463 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 199 223 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 343 367 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 295 319 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 559 583 IPR003591 -
Gabi4238g00064 1024 SMART LRR_typ_2 511 535 IPR003591 -
Gabi4238g00064 1024 Gene3D Ribonuclease Inhibitor 192 283 IPR032675 -
Gabi4238g00064 1024 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Gabi4238g00064 1024 Gene3D Ribonuclease Inhibitor 284 387 IPR032675 -
Gabi4238g00064 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 288 370 - -
Gabi4238g00064 1024 FunFam MDIS1-interacting receptor like kinase 1 798 1008 - -
Gabi4238g00064 1024 Gene3D Ribonuclease Inhibitor 388 629 IPR032675 -
Gabi4238g00064 1024 Pfam Leucine rich repeat N-terminal domain 31 77 IPR013210 -
Gabi4238g00064 1024 SUPERFAMILY L domain-like 370 622 - -
Gabi4238g00064 1024 Gene3D Phosphorylase Kinase; domain 1 713 797 - -
Gabi4238g00064 1024 Pfam Leucine rich repeat 488 548 IPR001611 GO:0005515
Gabi4238g00064 1024 Pfam Leucine rich repeat 416 476 IPR001611 GO:0005515
Gabi4238g00064 1024 Gene3D Transferase(Phosphotransferase) domain 1 798 1013 - -
Gabi4238g00064 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Gabi4238g00064 1024 Pfam Protein kinase domain 715 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00064 1024 SUPERFAMILY Protein kinase-like (PK-like) 708 989 IPR011009 -
Gabi4238g00064 1024 ProSiteProfiles Protein kinase domain profile. 713 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00064 Gabi-Chr4238 538186 541492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00064 6 1024 Receptor kinase-like Gene Family AT1G08590 60.116 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4238g00064 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00064 - - gmx:100811284 1768.82