Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00063 ATGCAGGGTTTTTCAAATTGTGGGTCAATGTCAACGTTGTCTAAAGATGATAACTTGGTCCTCTCCTCCGAGGATTCTTCTTCCCCAGATGAGTCTCACCTTGAATTGGGTCTCGCCTTAAGCCTCTCTCCATATGCCACAAAGGTTTTTCCTTCTTCCTCTAATGTCACTTCTGGGACCAACACACCTCCTGATTCTGTTGTCCCCTCTAATGGTCTCAGTCAAGTAGTTGGATGGCCCCCCCTTGGAATATATAGAATGAACAGCTATAATAGCCATGCAAAATCCCCAGCCACTGAAGTATTCAATTCTGTAGTTGAGGAAAATAAGAGCAATAAGAGTGCTGACAATGGCAATGATAATAAAAAAATTATCTCCAAAGAAAACGGAAATCTGAGGAGTTCCCTGTTTGTGAAAGTAAATATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTACAAAACCTTAGCACGAACCTTGGAGGATATGTTTAACGAACCAACTACAGTCCTCACTTGCAAAGGATCAAATGGAGAGAATCATGGTATTGTAGTTGGAGTAGATGGGCAGTCAAGATTGTTGGATGGATCTTCAAACTTTGTGCTCACTTACAAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAGCTCTGTGAGGAGACTAAGAATCATGAGAACATCTGAGGCAAATGGTCTTGCACCAAGATTGGAAGAAAAGAACAGCAGATTGAAAAGCAAGCCAATATAG 789 0.4183 MQGFSNCGSMSTLSKDDNLVLSSEDSSSPDESHLELGLALSLSPYATKVFPSSSNVTSGTNTPPDSVVPSNGLSQVVGWPPLGIYRMNSYNSHAKSPATEVFNSVVEENKSNKSADNGNDNKKIISKENGNLRSSLFVKVNMDGIPIGRKVDLSAHSSYKTLARTLEDMFNEPTTVLTCKGSNGENHGIVVGVDGQSRLLDGSSNFVLTYKDKEGDWMLVGDVPWWMFLSSVRRLRIMRTSEANGLAPRLEEKNSRLKSKPI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00063 262 Pfam AUX/IAA family 65 249 IPR033389 -
Gabi4238g00063 262 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4238g00063 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 245 IPR003311 GO:0005634|GO:0006355
Gabi4238g00063 262 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4238g00063 262 ProSiteProfiles PB1 domain profile. 135 242 IPR000270 GO:0005515
Gabi4238g00063 262 Gene3D - 130 252 - -
Gabi4238g00063 262 FunFam Auxin-responsive protein 130 250 - -
Gabi4238g00063 262 SUPERFAMILY CAD & PB1 domains 130 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00063 Gabi-Chr4238 531962 537161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00063 89 248 B3 DNA Binding Superfamily AT4G23980 30.000 1.82e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi4238g00063 AUX_IAA 4.7e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00063 K14484 - gmx:100779400 327.791