Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00062 ATGCAGGGTTTTTCAAATTGTGGGTCAATGTCAACGTTGTCTAAAGATGATAACTTGGTCCTCTCCTCCGAGGATTCTTCTTCCCCAGATGAGTCTCACCTTGAATTGGGTCTCGCCTTAAGCCTCTCTCCATATGCCACAAAGGTTTTTCCTTCTTCCTCTAATGTCACTTCTGGGACCAACACACCTCCTGATTCTGTTGTCCCCTCTAATGGTCTCAGTCAAGTAGTTGGATGGCCCCCCCTTGGAATATATAGAATGAACAGCTATAATAGCCATGCAAAATCCCCAGCCACTGAAGTATTCAATTCTGTAGTTGAGGAAAATAAGAGCAATAAGAGTGCTGACAATGGCAATGATAATAAAAAAATTATCTCCAAAGAAAACGGAAATCTGAGGAGTTCCCTGTTTGTGAAAGTAAATATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATAGTTCCTACAAAACCTTAGCACGAACCTTGGAGGATATGTTTAACGAACCAACTACAGTCCTCACTTGCAAAGATTCCATTGTTCCCCTAATGGTATTGACATCATTGTCAATAGGATCAAATGGAGAGAATCATGGTATTGTAGTTGGAGTAGATGGGCAGTCAAGATTGTTGGATGGATCTTCAAACTTTGTGCTCACTTACAAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAGCTCTGTGAGGAGACTAAGAATCATGAGAACATCTGAGGCAAATGGTCTTGCACCAAGATTGGAAGAAAAGAACAGCAGATTGAAAAGCAAGCCAATATAG 831 0.4152 MQGFSNCGSMSTLSKDDNLVLSSEDSSSPDESHLELGLALSLSPYATKVFPSSSNVTSGTNTPPDSVVPSNGLSQVVGWPPLGIYRMNSYNSHAKSPATEVFNSVVEENKSNKSADNGNDNKKIISKENGNLRSSLFVKVNMDGIPIGRKVDLSAHSSYKTLARTLEDMFNEPTTVLTCKDSIVPLMVLTSLSIGSNGENHGIVVGVDGQSRLLDGSSNFVLTYKDKEGDWMLVGDVPWWMFLSSVRRLRIMRTSEANGLAPRLEEKNSRLKSKPI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00062 276 ProSiteProfiles PB1 domain profile. 135 256 IPR000270 GO:0005515
Gabi4238g00062 276 MobiDBLite consensus disorder prediction 1 27 - -
Gabi4238g00062 276 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4238g00062 276 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 259 IPR003311 GO:0005634|GO:0006355
Gabi4238g00062 276 Pfam AUX/IAA family 66 263 IPR033389 -
Gabi4238g00062 276 SUPERFAMILY CAD & PB1 domains 130 252 - -
Gabi4238g00062 276 Gene3D - 130 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00062 Gabi-Chr4238 531962 537161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00062 89 262 B3 DNA Binding Superfamily AT4G23980 27.586 1.45e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi4238g00062 AUX_IAA 2e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00062 K14484 - gmx:100779400 318.161