LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4238g00054	ATGGCACCCAATCCAAAAGTGGTAGCGGCCTATCGGGCAATGGCAAATCTTGGGATTCATGAATCGAAAGTGAAACCAGTATTGAAGAAACTACTTAGATTGTATGATAAAAACTGGGAACTTATCGAAGAAGAGAGCTATAGAGCTTTGGCAGATGCAATCTTTGAGGAGGACGAAAATAAGGTGCCAGAGCTGGAGCAGAAAAAGAAAAGCAAGAGAGTTGATGAAGCAGAGGTAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCGACCATTGAAGAGGTTGCGTTTAAGAGGCCAAGAGGTTCAATCTTCTCGCCCACTGACTAGCTTTGGTCCCAGCTCAGCAGCTTCTCTATTGAAAATACCTAAATTAGATGATGACACAGTACCTGGAAGTAGTTTCAGTCTGGAGCCTCGAAGCACAGCAGCATTATCTGATGAAAATGCAAGCATTGAAGTGCGTCAAGTTCCACCACAAGATGCCATTGTTGACAAGGGAAAGAAACCTCTATCACCTCAAGTTAATACCAGCGGGAGAAAATTTATATCTGACAGAGCGCCCCCTGCTGTACCAGTCAAAGAACCAACAGTTGAACCGGGAGCCTCTCTGTTACCGAAAAACAAAATGCCTCTTACTTATTCTTTTATCGAGCCCAAGGATGAGCCTATTGATGATATACCAGATTATGAGGTTCCCATTGCGGTGGTTCCATCTGAACCATCAGGTGGAAGAGATGGTGCAACTGGAAAGCAAGATGGCCATGGCACTGTGGCATCACAATGCAGAGAGCCCCCTGCAGTACCATGTAAAGAGCCAACAGTTGAACCAGGAGCCTCTTATGCTTTGATAGAGCCCAAGGATGAGCCTGTTGATGATATGCCAAATTATGGGGTTCCCATTGCAGTGATTCCTTCTGAACTATCAAGTGGAAGAGATTCTTCAATGAAGAATGGTGCAGCTGGAAAGCAAGACTGCCATGACACTGTAGCATCACAATGCAGAGATGAAGAAATTGGAGGTGAAGATATTCTTCCTTTCTCAAATGAAGAAGCAACTTCTAATGTAGAGATAGCCTCGTCATCTATGGGAGAGGAAGGACCTGTAAATAAAACACTAACTGTTGACGTGTCCAAGGAATCTGAGGCAAATAGTAGTTTGATTGTCAGAGGAAAGAAAGATTCCGTTATGCCCTCTTGCATTTCAAATGGATCAATCAATGTTAAGACTTCTTCTTTGGTTGCACCTGAAGTTCCCATTTCTCTACCCTGTCGGAGTGGTCTGGATGATGCTGTACTAGTTTCCATGAAGGATGGAATGAATGATTTCATAGAAAGTGATGGTGGGAAGGAGCGCGAAGATCCGATATCTCCAAATTCATACCCAAAGCATCATGTTACAACTAAGGATATAATGACTATTTGTGACGTTAATGATCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTTAATAATATCACTAATGATTCCCTACCATCCTTTCACTACATACCACGAAACCTTGTTTTTGAAGATGCTTATGTTAATATTTCTCTATCTCGCATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTCCTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCGCAAGGCCTACTAAAAGAAGAGTTCTTGGAAGAGTGTATTGCCATCAGCCGCAACCCTCAAAATTATTTCTGTTGCAAATACTGCCCGCTGGAAAGAGCAAAGAATACTGATTGTCTGGAACCATGTAAAGGACACTTAAAAAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACTTTGTGGCAATCGGGTTGTCCAGCGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGACATACCGAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTAACTGTGAAAGAGTTGCATGAGAGGAATTTGAAATATCCCGAAAATGGGAAATATAGGTACCCAATTATATTAGATGCAAATTGGGATTCAGAAGTTCTGAAGGATAAAGAAGCTCTTTGCTTATATGCAGCATCGTATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAATTGAGGGTCCATCTCATCACTACTATCATTTTGCCTTCTTCACAGCCAGAAAAATAGAAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATCATCCTGTCCAGCTGTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAGATCGTCAATTGCAAGATGA	2421	0.4188	MAPNPKVVAAYRAMANLGIHESKVKPVLKKLLRLYDKNWELIEEESYRALADAIFEEDENKVPELEQKKKSKRVDEAEVDDEEAHMHDEPLRPLKRLRLRGQEVQSSRPLTSFGPSSAASLLKIPKLDDDTVPGSSFSLEPRSTAALSDENASIEVRQVPPQDAIVDKGKKPLSPQVNTSGRKFISDRAPPAVPVKEPTVEPGASLLPKNKMPLTYSFIEPKDEPIDDIPDYEVPIAVVPSEPSGGRDGATGKQDGHGTVASQCREPPAVPCKEPTVEPGASYALIEPKDEPVDDMPNYGVPIAVIPSELSSGRDSSMKNGAAGKQDCHDTVASQCRDEEIGGEDILPFSNEEATSNVEIASSSMGEEGPVNKTLTVDVSKESEANSSLIVRGKKDSVMPSCISNGSINVKTSSLVAPEVPISLPCRSGLDDAVLVSMKDGMNDFIESDGGKEREDPISPNSYPKHHVTTKDIMTICDVNDLTKGEERVKISWVNNITNDSLPSFHYIPRNLVFEDAYVNISLSRIGNEDCCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLEECIAISRNPQNYFCCKYCPLERAKNTDCLEPCKGHLKRKFIKECWSKCGCGKLCGNRVVQRGITCNLQVFLTSDGKGWGLRTLEDIPKGAFVCEFVGEILTVKELHERNLKYPENGKYRYPIILDANWDSEVLKDKEALCLYAASYGNAARFINHRCLDANLIEIPVEIEGPSHHYYHFAFFTARKIEAQEELTWDYGINFDDHDHPVQLFRCRCGSKFCRNMKRSNRSIRSSIAR	806

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4238g00054	806	CDD	SET_SETDB-like	503	768	-	-
	Gabi4238g00054	806	ProSiteProfiles	Pre-SET domain profile.	531	632	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Gabi4238g00054	806	MobiDBLite	consensus disorder prediction	165	206	-	-
	Gabi4238g00054	806	MobiDBLite	consensus disorder prediction	242	276	-	-
	Gabi4238g00054	806	SUPERFAMILY	SET domain	489	791	IPR046341	-
	Gabi4238g00054	806	Gene3D	-	1	60	IPR043017	-
	Gabi4238g00054	806	ProSiteProfiles	SET domain profile.	635	768	IPR001214	GO:0005515
	Gabi4238g00054	806	SMART	set_7	635	774	IPR001214	GO:0005515
	Gabi4238g00054	806	Pfam	Pre-SET motif	483	627	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Gabi4238g00054	806	Pfam	SET domain	647	768	IPR001214	GO:0005515
	Gabi4238g00054	806	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	801	-	-
	Gabi4238g00054	806	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	805	IPR025776	-
	Gabi4238g00054	806	SMART	preset_2	479	619	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Gabi4238g00054	806	MobiDBLite	consensus disorder prediction	60	96	-	-
	Gabi4238g00054	806	Gene3D	SET domain	482	793	IPR046341	-
	Gabi4238g00054	806	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4238g00054	Gabi-Chr4238	441078	457685	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4238g00054	481	791	Su(var)3-9 homologs	AT1G73100	29.573	6.75e-30	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Gabi4238g00054		Pre-SET	1.9e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4238g00054	-		-	gmx:100778335	840.491