Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00053 ATGGCACCCAATCCAAAAGTGGTAGCGGCCTATCGGGCAATGGCAAATCTTGGGATTCATGAATCGAAAGTGAAACCAGTATTGAAGAAACTACTTAGATTGTATGATAAAAACTGGGAACTTATCGAAGAAGAGAGCTATAGAGCTTTGGCAGATGCAATCTTTGAGGAGGACGAAAATAAGGTGCCAGAGCTGGAGCAGAAAAAGAAAAGCAAGAGACCAGTAGCTGCTGAAATGTCTTCTGGCCTTTCTAATATCCAGGAAGCAGAGGTAGATGATGAAGAAGCTCATATGCATGATGAGCCATTGCGACCATTGAAGAGGTTGCGTTTAAGAGGCCAAGAGGTTCAATCTTCTCGCCCACTGACTAGCTTTGGTCCCAGCTCAGCAGCTTCTCTATTGAAAATACCTAAATTAGATGATGACACAGTACCTGGAAGTAGTTTCAGTCTGGAGCCTCGAAGCACAGCAGCATTATCTGATGAAAATGCAAGCATTGAAGTGCGTCAAGTTCCACCACAAGATGCCATTGTTGACAAGGGAAAGAAACCTCTATCACCTCAAGTTAATACCAGCGGGAGAAAATTTATATCTGACAGAGCGCCCCCTGCTGTACCAGTCAAAGAACCAACAGTTGAACCGGGAGCCTCTCTGTTACCGAAAAACAAAATGCCTCTTACTTATTCTTTTATCGAGCCCAAGGATGAGCCTATTGATGATATACCAGATTATGAGGTTCCCATTGCGGTGGTTCCATCTGAACTATCAAGTGGAAGAGATTCTTCAATGAAGAATGGTGCAGCTGGAAAGCAAGACTGCCATGACACTGTAGCATCACAATGCAGAGATGAAGAAATTGGAGGTGAAGATATTCTTCCTTTCTCAAATGAAGAAGCAACTTCTAATGTAGAGATAGCCTCGTCATCTATGGGAGAGGAAGGACCTGTAAATAAAACACTAACTGTTGACGTGTCCAAGGAATCTGAGGCAAATAGTAGTTTGATTGTCAGAGGAAAGAAAGATTCCGTTATGCCCTCTTGCATTTCAAATGGATCAATCAATGTTAAGACTTCTTCTTTGGTTGCACCTGAAGTTCCCATTTCTCTACCCTGTCGGAGTGGTCTGGATGATGCTGTACTAGTTTCCATGAAGGATGGAATGAATGATTTCATAGAAAGTGATGGTGGGAAGGAGCGCGAAGATCCGATATCTCCAAATTCATACCCAAAGCATCATGTTACAACTAAGGATATAATGACTATTTGTGACGTTAATGATCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTTAATAATATCACTAATGATTCCCTACCATCCTTTCACTACATACCACGAAACCTTGTTTTTGAAGATGCTTATGTTAATATTTCTCTATCTCGCATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTCCTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCGCAAGGCCTACTAAAAGAAGAGTTCTTGGAAGAGTGTATTGCCATCAGCCGCAACCCTCAAAATTATTTCTGTTGCAAATACTGCCCGCTGGAAAGAGCAAAGAATACTGATTGTCTGGAACCATGTAAAGGACACTTAAAAAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACTTTGTGGCAATCGGGTTGTCCAGCGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGACATACCGAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTTTAACTGTGAAAGAGTTGCATGAGAGGAATTTGAAATATCCCGAAAATGGGAAATATAGGTACCCAATTATATTAGATGCAAATTGGGATTCAGAAGTTCTGAAGGATAAAGAAGCTCTTTGCTTATATGCAGCATCGTATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAATTGAGGGTCCATCTCATCACTACTATCATTTTGCCTTCTTCACAGCCAGAAAAATAGAAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATCATCCTGTCCAGCTGTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAGATCGTCAATTGCAAGATGA 2256 0.4131 MAPNPKVVAAYRAMANLGIHESKVKPVLKKLLRLYDKNWELIEEESYRALADAIFEEDENKVPELEQKKKSKRPVAAEMSSGLSNIQEAEVDDEEAHMHDEPLRPLKRLRLRGQEVQSSRPLTSFGPSSAASLLKIPKLDDDTVPGSSFSLEPRSTAALSDENASIEVRQVPPQDAIVDKGKKPLSPQVNTSGRKFISDRAPPAVPVKEPTVEPGASLLPKNKMPLTYSFIEPKDEPIDDIPDYEVPIAVVPSELSSGRDSSMKNGAAGKQDCHDTVASQCRDEEIGGEDILPFSNEEATSNVEIASSSMGEEGPVNKTLTVDVSKESEANSSLIVRGKKDSVMPSCISNGSINVKTSSLVAPEVPISLPCRSGLDDAVLVSMKDGMNDFIESDGGKEREDPISPNSYPKHHVTTKDIMTICDVNDLTKGEERVKISWVNNITNDSLPSFHYIPRNLVFEDAYVNISLSRIGNEDCCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLEECIAISRNPQNYFCCKYCPLERAKNTDCLEPCKGHLKRKFIKECWSKCGCGKLCGNRVVQRGITCNLQVFLTSDGKGWGLRTLEDIPKGAFVCEFVGEILTVKELHERNLKYPENGKYRYPIILDANWDSEVLKDKEALCLYAASYGNAARFINHRCLDANLIEIPVEIEGPSHHYYHFAFFTARKIEAQEELTWDYGINFDDHDHPVQLFRCRCGSKFCRNMKRSNRSIRSSIAR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00053 751 Gene3D SET domain 427 738 IPR046341 -
Gabi4238g00053 751 MobiDBLite consensus disorder prediction 61 75 - -
Gabi4238g00053 751 MobiDBLite consensus disorder prediction 61 107 - -
Gabi4238g00053 751 Coils Coil 747 751 - -
Gabi4238g00053 751 MobiDBLite consensus disorder prediction 90 107 - -
Gabi4238g00053 751 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 750 IPR025776 -
Gabi4238g00053 751 Pfam SET domain 592 713 IPR001214 GO:0005515
Gabi4238g00053 751 MobiDBLite consensus disorder prediction 177 218 - -
Gabi4238g00053 751 Gene3D - 1 60 IPR043017 -
Gabi4238g00053 751 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 746 - -
Gabi4238g00053 751 CDD SET_SETDB-like 448 713 - -
Gabi4238g00053 751 SMART set_7 580 719 IPR001214 GO:0005515
Gabi4238g00053 751 ProSiteProfiles Pre-SET domain profile. 476 577 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4238g00053 751 SUPERFAMILY SET domain 434 736 IPR046341 -
Gabi4238g00053 751 ProSiteProfiles SET domain profile. 580 713 IPR001214 GO:0005515
Gabi4238g00053 751 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Gabi4238g00053 751 SMART preset_2 424 564 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4238g00053 751 Pfam Pre-SET motif 428 572 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00053 Gabi-Chr4238 441078 457685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00053 426 736 Su(var)3-9 homologs AT1G73100 29.573 3.29e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4238g00053 Pre-SET 3.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00053 - - gmx:100788602 1048.88