Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00050 ATGGAAGCACGCTCTGCTTTCTCCATTGAAAGATCAAGTGCAAAGCAAATCAGTAACATGGGGATGTCTGGAGCACTTACTTCATCGATGCCTGTCCTTCCAACGCCTCTAGAAGAGAAATACCCCATATTATCTGATTCACAGCCGGCTTTTGTGGAAAAAGAGCTTAAAATAAGACCTTTTACTCATTCAAGTCATTTAAGTTCCAGCGGAGCAGTTGGGCATTTGTTTTCATCCTCCCCTGGATATTCAAATGATCTTCATCACTCATCCCTTTCACCTCATGAAAAACACTCTAGAAATGCTAATTTTGTTTCACAGTCAATGAGTAACATGGCTTTATTGTCATCATCTTATTCTTCAAGTAATGGACCGATGCCTTCTACAACATCAACCCATTATTCCAAAGGAAACAATGCTTCCTGGCATGCAGATTCCCTGCCTAGCTTTCTTGATTTCCCTGCGAATACCTCCATTGATAGTAGTCAAGTAGAGAGCAGTTCCTGCAATATTATGGCATCTGAGGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATTAGTGATGATGAAAATTTGACTTCTAGTTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGTTTCAAAATCATCTTCACAATTTTCAGCAGGACATCAATCCCAAAGCCATCAACAACTTCCTGCTTCATCTGGAGAAAATCGTCTTGTTGTTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCGCGGATGCGTTGGACACCTGAGCTACATGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGCGGGAGTGAAAGAGCTACTCCAAAGGGTGTGCTGAAGCTTATGAAAGTAGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAAACATCTGAAGGAGCTACAGAGAAAAAACTATGTCCCATTGAAGACATATCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGATTGCAGATGGAGGTTCAGAAGCGGTTGCATGAGCAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAACAATGCAAACCTGGCATTGAAACATTTAAGGCATCGTCATCTGCCATTGAGAGTCCATCTGGAGTGTCTTCTGATGCCATGAAAGATTCTCCTACCAAAACTGAATTGGAAGCCTCCAAAGTGGACCATTGCAGGTCTGAGCCTGATCAAGCTAATGGCAGCGCCACAGTTGACGAAAGCTCGTCGGAAGTGGGTGGGAAGCCGGATGCTCCGGAAAGTCAAACTTCCGAGAATCCTAAGGAACATGCTAGTGAAGATAGTGCTCATGCCTCAAAGCGTCCAAGGACAGATGAGTAA 1455 0.4316 MEARSAFSIERSSAKQISNMGMSGALTSSMPVLPTPLEEKYPILSDSQPAFVEKELKIRPFTHSSHLSSSGAVGHLFSSSPGYSNDLHHSSLSPHEKHSRNANFVSQSMSNMALLSSSYSSSNGPMPSTTSTHYSKGNNASWHADSLPSFLDFPANTSIDSSQVESSSCNIMASEEYSKRNDWQEWADQLISDDENLTSSWNDLLADNIQDLEPKVSKSSSQFSAGHQSQSHQQLPASSGENRLVVAPSSSANSAPAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPETSEGATEKKLCPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASSSAIESPSGVSSDAMKDSPTKTELEASKVDHCRSEPDQANGSATVDESSSEVGGKPDAPESQTSENPKEHASEDSAHASKRPRTDE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 460 484 - -
Gabi4238g00050 484 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 416 433 - -
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 215 259 - -
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 215 257 - -
Gabi4238g00050 484 Coils Coil 346 366 - -
Gabi4238g00050 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Gabi4238g00050 484 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Gabi4238g00050 484 Pfam MYB-CC type transfactor, LHEQLE motif 343 389 IPR025756 -
Gabi4238g00050 484 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 225 474 IPR044848 GO:0003700
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 397 484 - -
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 397 415 - -
Gabi4238g00050 484 MobiDBLite consensus disorder prediction 435 459 - -
Gabi4238g00050 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Gabi4238g00050 484 Gene3D - 257 316 - -
Gabi4238g00050 484 FunFam Myb family transcription factor 257 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00050 Gabi-Chr4238 411007 418201 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00050 1 400 G2-like Transcription Factor Family AT4G28610 49.635 2.35e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4238g00050 Myb_DNA-binding 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00050 - - gmx:100810560 775.007