Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00048 ATGACAACTTTTCACAAGACTCATGCTCTTCTCTTTCATATATTTGTGTTATCTTTGCTTCCATTGAAAATCACAGCATCACCAAGAACAGAAGCTGAAGCCCTTGTCAAATGGAAGAACACTCTATCAACTCCTCTTCCTCCTTCTCTCAACTCATGGTCACTCACCAACCTTGGCAACCTTTGCAACTGGGATTCTGTTGTTTGTGACAACACTTCTACAACAGTCTCAGAGATAAACTTCCTTGGTGCCAATCTCACTGGGACACTCAATGACTTGGATTTTGCTTCCCTCCCCAACCTCACACACCTCAACCTCAATGGTAACAGTTTTGGTGGATCAATACCATCAACAATTGGCAACCTCTCCAAGCTCACTTTCTTGGACTTTGGTAACAACTTATTTGAAGACACAATACCTTCTGAGATAGGCCAGTTAAGGGAACTTCAGTATATTAGTTTTTACATCAACGATCTCAATGGCACCATTCCTTATCAGCTCACCAATCTCCCCAAGGTATGGTACCTGAATCTTGGATTCAACTCCTTTATATCTCCTCCTGACTGGTCCCAATATTCATCCATGCTTTCCTTAACTTACCTTGGTTTGGATCTCAATGAATTCACTGCTGAATTCCCAAGTTTCATACTGGGGTGCAAAAACTTGACATACCTTGACCTCTCTCAGAATAATTTAAAAGGCACAATACCAGAATCCATGTATAGCAACTTGGGCAAGCTAGAATACCTCAACCTCACCAACTGTGGGCTAGAAGGGAAACTATCATCAAACTTGTCATTGCTCTCTAATCTCAAAGAACTTCGTTTAGGTAATAACAAGTTTTCTGGTCCTATTCCCACAGACATAGGATTGATATCTGGTCTTCAATTTATTGAATTGAATAACATTTCAGCCCATGGGGAAATTCCTTCCTCCTTAGGCCAACTCAAAGAGCTACAATATCTTGATCTCCGTGATAATTTTTTGAACTCTACAATCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTCCTGAGTTTAGCAACAAATAATCTGACTGGTTCCTTGCCTTTGTCATTAGCTAATCTTGTCAAACTGTCACAGTTGGGACTATCAGAAAATTCTTTTTCTGGTCAAATTTCTGCTTCACTGATCTCTAACTGGACTGAGTTAACCTCTCTGCAACTCCAATATAATAAATTAACAGGAAAGATTCCTCCACAGATTGGCCTGTTGAAAAAAATTGGACTCCTCTTTCTTTACAAGAATCTGTTCTCTGGTCCCATTCCTGAAGAGGTTGGAAACCTGAAGGAAATGACAGAATTAGACCTTTCAGGAAACCACTTATCTGGTCCAATTCCACCAACCATTTGGAATCTGACAAACATTATAGTCATGAATCTTTTCTTCAATAAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATTTTTGATGTCAATGACAATAATTTGGATGGAGAGTTGCCAGTGACCGTTGCTCAACTAACCACTTTAACATTTTTTTCTGTGTTCACCAATAACTTCTCAGGAAGCATTCCCAGAGATTTTGGGAAGAATAGTCCTTCTTTGACTCATGTCTACCTTTCAAACAACAGCTTCTCAGGAGAACTGCCTCCTGACTTGTGCAGTGGTCTCATGCTAACTGCTTTGGCAGTCAATAACAACAGCTTTTCAGGATCATTGCCAAAGTCATTGAGAAATTGTTCATCCCTAATTAGAGTTAGGCTTGATGAAAACCAGTTCACTGGAAACATCACAGAAGCATTTGGGGTTTACACAAATCTTGTTTTTATCTCACTCAGTGGAAATCAACTTGTTGGTGAGCTCTCCCCTCAGTGGGGTGAATCTGTCAACTTGACTGAGATAGAAATGAGTGGAAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAGTCAATTACAATATCTAAACCTTCATTCCAATGAATTCACTGGCAATATCCCACCTGAAATTGGAAATCTAAGCCTGCTCTACATGTTCAACTTGAGCAGGAACTCTTTGTCAGGAGAAATCCCTGAGAGTATTGGCAAATTGGCTCAGCTTAATTCCCTTGATTTATCAGATAACAATTTCAGTGGAAGCATTCCTAAAGAGCTAAGTAACTGTAATCGCTTACTGAGCCTGAACTTAAGCCATAACAATTTGTCTGGGGAGATACCATATGAACTTGGAAATCTGTTCTCACTCCAATACTTGTTGGACCTCAGCAGCAACTCTCTTTCAGGGGAAATTCCTCAAAACCTTGGAAAGCTCACATCATTGGAGATTCTCAATGTCTCACACAACAATCTATCAGGGACAATACCACAGTCCTTTTCAAGTATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACCACTTGACTGGTTTAATCCCAAAAGGTGGAATTTTCCAGACAGCAACTGCCAAAGCTTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAGAAGGATTAAATTGCACCAATGTATTTTCCCCAGACAAATCCGGAGGGGTTAACAAAAAGGTTCTTCTTGGTTTCATTTTACCAGTGGGGTTACTATTTATTTTGATGATTGGTGTTGGAATCCTACTATACCGAAGGCAAGCAAAACACCTTGATGAAGAGTCCAAAAGCATTGAAAATAATTATCAGTCTATTTGCATGTTATGGGGAAGAGATGGACAATGCACTTTTTCTGAACTTGTTAAGGCCACCAATGACTTCAATGAAAATTACTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCAGACTTACCTACAGGTCAAATTGTTGCTGTTAAAAGGCTCAATATATCAGACTCTAATGACATTCCAGCAGTGAACCGCCAGAGTTTTCTGAATGAGATAAAAACGCTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGGGGGAGACAAATGTTCTTGGTTTATGAATATATAGATAGAGGAAGTTTGGGGAAAGTATTGTATGGAGAGAAAGGAAAATTGGATCTAAACTGGGAAACAAGGTTGAAAATTGTGCAGGGAATAGCGCATGCAATTTCCTACCTGCACAGTGACTGTTCCCCACCAGTTGTGCACAGAGATGTAACATTGAATAACATACTACTTGACTCAGACTTTGAACCCCATCTTGCAGATTTTGGCACAGCAAAGTTGCTTATCTCTAACACTTCAACCTGGACCTCAGTTGCTGGTTCCTATGGCTACATGGCTCCAGAGCTAGCACAAACCATGAGGGTCACTGACAAATGTGATGTCTATAGTTTTGGAGTGGTGGTATTAGAGATAATGATGGGAAACCACCCTGGAGAACTCTTGGCTACCTTGTCTTCAAACAAGTTTTTGTCATCATTGGAGGATCCACAAGTGTTTCTGAAGGATGTGCTAGACCAACGGCTTCCATCTCCAAGTGGCCAAATAGCAGAAGCAGTAATTTTCACAGTGACCACAGCTTTGGCTTGCACGCGTGTGGCTCCAGAGTCTAGACCCATGATGCGTTCAGTTGCACAAGAACTATCAGCTACTACACAGGCTTGTCTTTCTGAGCCATTTGGCATGATAACCATAAGCAAGCTTACAGGGTTCCAGAAATAG 3681 0.4053 MTTFHKTHALLFHIFVLSLLPLKITASPRTEAEALVKWKNTLSTPLPPSLNSWSLTNLGNLCNWDSVVCDNTSTTVSEINFLGANLTGTLNDLDFASLPNLTHLNLNGNSFGGSIPSTIGNLSKLTFLDFGNNLFEDTIPSEIGQLRELQYISFYINDLNGTIPYQLTNLPKVWYLNLGFNSFISPPDWSQYSSMLSLTYLGLDLNEFTAEFPSFILGCKNLTYLDLSQNNLKGTIPESMYSNLGKLEYLNLTNCGLEGKLSSNLSLLSNLKELRLGNNKFSGPIPTDIGLISGLQFIELNNISAHGEIPSSLGQLKELQYLDLRDNFLNSTIPSELGLCTNLTFLSLATNNLTGSLPLSLANLVKLSQLGLSENSFSGQISASLISNWTELTSLQLQYNKLTGKIPPQIGLLKKIGLLFLYKNLFSGPIPEEVGNLKEMTELDLSGNHLSGPIPPTIWNLTNIIVMNLFFNKLSGTIPMDIGNLTSLQIFDVNDNNLDGELPVTVAQLTTLTFFSVFTNNFSGSIPRDFGKNSPSLTHVYLSNNSFSGELPPDLCSGLMLTALAVNNNSFSGSLPKSLRNCSSLIRVRLDENQFTGNITEAFGVYTNLVFISLSGNQLVGELSPQWGESVNLTEIEMSGNKLSGKIPSELSKLSQLQYLNLHSNEFTGNIPPEIGNLSLLYMFNLSRNSLSGEIPESIGKLAQLNSLDLSDNNFSGSIPKELSNCNRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSSNSLSGEIPQNLGKLTSLEILNVSHNNLSGTIPQSFSSMLSLQSIDFSYNHLTGLIPKGGIFQTATAKAYVGNSGLCGEVEGLNCTNVFSPDKSGGVNKKVLLGFILPVGLLFILMIGVGILLYRRQAKHLDEESKSIENNYQSICMLWGRDGQCTFSELVKATNDFNENYCIGKGGFGSVYRADLPTGQIVAVKRLNISDSNDIPAVNRQSFLNEIKTLTGVRHRNIIKLYGFCSRGRQMFLVYEYIDRGSLGKVLYGEKGKLDLNWETRLKIVQGIAHAISYLHSDCSPPVVHRDVTLNNILLDSDFEPHLADFGTAKLLISNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGNHPGELLATLSSNKFLSSLEDPQVFLKDVLDQRLPSPSGQIAEAVIFTVTTALACTRVAPESRPMMRSVAQELSATTQACLSEPFGMITISKLTGFQK 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00048 1226 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Gabi4238g00048 1226 SUPERFAMILY RNI-like 79 403 - -
Gabi4238g00048 1226 Gene3D Phosphorylase Kinase; domain 1 887 1007 - -
Gabi4238g00048 1226 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Gabi4238g00048 1226 FunFam Leucine-rich repeat receptor protein kinase MSP1 890 1007 - -
Gabi4238g00048 1226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1053 1065 IPR008266 GO:0004672|GO:0006468
Gabi4238g00048 1226 FunFam MDIS1-interacting receptor like kinase 2 193 387 - -
Gabi4238g00048 1226 SUPERFAMILY RNI-like 299 619 - -
Gabi4238g00048 1226 SUPERFAMILY Protein kinase-like (PK-like) 908 1201 IPR011009 -
Gabi4238g00048 1226 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Gabi4238g00048 1226 Gene3D Ribonuclease Inhibitor 482 847 IPR032675 -
Gabi4238g00048 1226 Pfam Leucine rich repeat 197 257 IPR001611 GO:0005515
Gabi4238g00048 1226 Pfam Leucine rich repeat 757 812 IPR001611 GO:0005515
Gabi4238g00048 1226 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Gabi4238g00048 1226 PRINTS Leucine-rich repeat signature 222 235 - -
Gabi4238g00048 1226 PRINTS Leucine-rich repeat signature 775 788 - -
Gabi4238g00048 1226 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 534 848 - -
Gabi4238g00048 1226 FunFam MDIS1-interacting receptor like kinase 2 1008 1207 - -
Gabi4238g00048 1226 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 509 1203 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 316 339 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 268 297 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 630 653 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 437 463 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 606 625 - -
Gabi4238g00048 1226 SMART LRR_sd22_2 219 252 - -
Gabi4238g00048 1226 SUPERFAMILY L domain-like 533 826 - -
Gabi4238g00048 1226 ProSitePatterns Protein kinases ATP-binding region signature. 933 955 IPR017441 GO:0005524
Gabi4238g00048 1226 FunFam Leucine-rich receptor-like protein kinase family protein 430 528 - -
Gabi4238g00048 1226 CDD STKc_IRAK 933 1201 - -
Gabi4238g00048 1226 ProSiteProfiles Protein kinase domain profile. 927 1214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00048 1226 SMART LRR_typ_2 437 461 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 219 243 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 268 292 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 799 824 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 702 726 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 98 121 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 535 558 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 122 146 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 775 798 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 654 678 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 485 509 IPR003591 -
Gabi4238g00048 1226 SMART LRR_typ_2 316 340 IPR003591 -
Gabi4238g00048 1226 Gene3D Ribonuclease Inhibitor 193 481 IPR032675 -
Gabi4238g00048 1226 Gene3D Transferase(Phosphotransferase) domain 1 1008 1211 - -
Gabi4238g00048 1226 Pfam Protein kinase domain 930 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00048 Gabi-Chr4238 398582 402352 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00048 31 670 Receptor kinase-like Gene Family AT4G08850 31.308 1.66e-77 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4238g00048 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00048 - - gmx:100809137 1897.86