Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00046 ATGAAGATAACTTTTCAGCTGACAATTTTCTCTCTGGTTCTGTCTTGTATACTTGCAGAGATTTCAGCACAGAAAGAAGCTGAGTCTCTGATTACCTGGATTAAAAGTTTGAACTCTCCCTTGCCACCTTCATGGATTCTTATAAACAACAGCAGTAGTCCATGCAAGTGGACTGGCATTACATGTGATAAACAAGGCAGTGTTGTTGAGATAATGCTTCCCAATGCAGGCCTAGATGGTACCCTTAACAGGTTTGATTTTTCTGCTTTTCCCAATCTCACTACTTTCAATGTCAATTTGAATAACCTGGTTGGAGAGATACCAGCTGGAATTGGAAATGCAACAAAGATGAAAATACTTGATTTGGGTAGCAACAATTTCACTTATCCAATCCCCCAAGAAATGGGAAACCTCATAGAGCTACAAGTTCTTCGTCTCTCTAACAACTCACTCTTAAAACAAATACCAACTCAACTTAGTAACTTGCAGAAATTATGGCTTCTTGATCTAGGGGGGAATTATTTAGAGAATCCTGACCCTGCTAAGTTTAAGGGCATGGTGTCCATAATAGAACTCAATCTCACCTATAACTATCTCACAGAGGTTCCCCCATTTGTTTCTAAATGTCCAAAGTTGGTTTCTCTTGATCTATCACTCAACACCATCACTGGGCAGATTCCAATACAATTACTGGCCAGTCCTAGGAACCTCACAATCCTAGTCTTGACAAACAACAACTTGGAGGGGCTAATTCCAGCAGAAATTAAGAACCTTTCAAACCTCAAACACCTAAGTCTTGGAATAAACAAGCTGAATGGTACTATACCAGAGGAGATCGGTCTCTTATCATACCTTGAGGTGCTTGAATTGCATCAAAATGTCTTCCAAGGTCCAATACCATCATCAATTGGAAATCTTCGTATGCTTCAGTTTTTGGATCTTCACAATTCAGGGCTGAATTCCAGCATTCCTGATGAGATAGGCTTCTGCACCAACCTTACCTTAGTTGATATGTCAGGAAATAGCCTGACAGGTCCCTTGCCTCTTTCCATGGCTTCATTAACAAGGATCAAAGATTTGGGAATCTCTGATAACAATTTATCCGGAGAACTTTATTCATCTCTTGTTTCCAGTTGGCCAGAACTCACTTCTTTACAACTCCAGTTTAATCACCTTTCAGGAAGACTTCCCCCAGAGATTGGTTCACTTCACAATCTAACTCTCCTGTTCCTATATAACAACCAATTTTCTGGACCAATACCTCCTGAAATTGGAAACTTATCAAGCATACAAGATCTTCAACTGTCCAACAACTATTTCAGTGGTTCCATCCCATCAACCTTTGGAAAGTTATATAAGCTCCGCACATTATATCTGGCTTCAAACCAACTAAGTGGAGCCCTTCCTCCACAAATAGGCAATTTGGAAAGCTTACTAGAGCTGGACTTAAGTGAGAATAAGCTTGAAGGACCTTTGCCCTCATCAATAATTCGTTTGAAAAACATCAATATCCTTTATCTTCACTCCAACAATTTCACAGGAAGTATTCCTGAAGATTTTGGACCTACCTTTCTAACGAATGTGAGCTTTGCCAACAATAGTTTTTCTGGAAACCTCCCTTCAGGAATATGCAAGGGAGGGAATCTTGTCTATTTGGCAGCCAGTATGAATAATCTATTGGGTCCAATCCCAGAAAGTCTGAAAAACTGCACTGGACTAATCAGAGTCTTGCTTGGAAACAATCTTCTCAGTGGAGATATTACCAATGCATTTGGTATATACCCAAATCTGGACTTCATTGATTTAGGACATAATCAGCTCTCTGGTTTGTTATCAAGTAACTGGGGAGAGTGCAAAAGTCTCTCAAGTTTCAGCATATCTGCCAATAAGGTACAAGGGAATATCCCTCCTGAGCTTGGGAAATTGCCAAGTTTGCAAAACTTTGACCTATCTGACAACAATCTCACAGGAAATATCCCGGTGGAGCTTTTTAGCTCATCTTCCTTGCTTCTCAATCTAAATTTGAGCAACAATGATCTCTCAGGTCAGATACCAACACAGATAGGAGAACTTTCAGAGTTGCGGTATCTGGATTTATCAGCAAACAATCTGAGTGGTACAATTCCAAGCCAACTAGGAAACTGCAGGAAACTTATATTCTTGAAACTGAGCATGAACAAGTTAGATGGGAATATGCCGTATGAGCTTGGGAATTTGCTTTATTTGCAGCCTCTTTTAGATCTCAGCCATAACTCACTGAGTGGACAGATAATCACACAGCTGGGAAATTTGATATCCCTGGAGGTTTTGAATCTTTCTCATAACCAGCTTTCTGGGGGAATACCTTCTGGTCTTGAAGGACTTATCAGCCTTCAGTCAGTTGATATATCCTACAACAAACTTGAAGGTCACCTTCCAAACCTTGAAGCTTTTCATAATGCTCCAGCAGAAGCACTGGTGAAAAATGCTGGTTTGTGTGCTGGTCCTGATGGCAATGCAAATCTGAGTCCATGTGGTGGAGAGAAAAGCAATAAAGGTAATAAACATAAGCTGATAATTGCTGTAGTCATTCCAGTTGCTGCTTTATTCATTCTACTGGTTTCCTTTGGAATCTTCATCTTCAAGCGTTATCAAAGAGTTGATCAAGATGAAAAGGACAAAAGTTCAAACGGAAAGAACTCATTCTCCATATGGAATTATAGGAGTATAATTGAGTTTAAGGATATACGTGCTGCAACTGATAATTTCAGTGACAAACACTGCATAGGGATAGGAGGACAAGGCAGTGTCTACAAGGCAGTGCTTCCAACAGGTGGCATCTTTGCAATAAAACGTCTTCACCAACAAGAAGAAATAGACTTCTCTGGACACCAGGAAAAGAACTTCATGTCTGAAATTCAAGCATTGACTAATATTCGACATAGGAATATTGTAAAAATGTGTGGATTCAGTTACAGGGATATGTCCATGTTTTTCATATATGAGTATGTGGAAAGAGGCTCTTTAGGAATGGTGTTGCAGAACGAACAGGAGGCAAATATCTTGACCTGGGATATCAGGTTAAACATTATAAAAGGAGTGGCAAATGCATTGTCCTATCTGCACCATGATTGCACACCAAGCATTGTTCACAGAGACATATCAGGAAACAATATTCTTTTGGACTCTGAATATGTGCCTAAGATCTCTGACTTTGGGACAGCAAGGTTGCTAAAAGAAGGAGAATCAAACTGGACTGCTCCAGCCGGATCATATGGCTATATAGCACCAGAGCTTGCACTTACAATGAAGGTGACAGAAAAAAGTGACGTTTACAGTTTTGGAATTGTTGCATTGCAAATTCTGGTGGGGAAGTACCCTCATGAGCTCTTTTTGTGTTTAGAGTCTGGGGAATTGGATCGACACTTTGTAGATTTCTTAGATAAGAGGGTAGATACTCCAGTTGATCCTGCTGTCCCACTCTTAATATTGGCTGCAACCATGATCCTTAAATGTCTGAATAAAGATCCTTTATACCGACCCACAATGCATCAAGTGTCCCAAGAGCTTTTATCATCTACCAGTTGGTCACTATCTGTTCCTTTCAGCATGATCACAGTGCAGAATTTGCTTGACAATTAA 3621 0.4004 MKITFQLTIFSLVLSCILAEISAQKEAESLITWIKSLNSPLPPSWILINNSSSPCKWTGITCDKQGSVVEIMLPNAGLDGTLNRFDFSAFPNLTTFNVNLNNLVGEIPAGIGNATKMKILDLGSNNFTYPIPQEMGNLIELQVLRLSNNSLLKQIPTQLSNLQKLWLLDLGGNYLENPDPAKFKGMVSIIELNLTYNYLTEVPPFVSKCPKLVSLDLSLNTITGQIPIQLLASPRNLTILVLTNNNLEGLIPAEIKNLSNLKHLSLGINKLNGTIPEEIGLLSYLEVLELHQNVFQGPIPSSIGNLRMLQFLDLHNSGLNSSIPDEIGFCTNLTLVDMSGNSLTGPLPLSMASLTRIKDLGISDNNLSGELYSSLVSSWPELTSLQLQFNHLSGRLPPEIGSLHNLTLLFLYNNQFSGPIPPEIGNLSSIQDLQLSNNYFSGSIPSTFGKLYKLRTLYLASNQLSGALPPQIGNLESLLELDLSENKLEGPLPSSIIRLKNINILYLHSNNFTGSIPEDFGPTFLTNVSFANNSFSGNLPSGICKGGNLVYLAASMNNLLGPIPESLKNCTGLIRVLLGNNLLSGDITNAFGIYPNLDFIDLGHNQLSGLLSSNWGECKSLSSFSISANKVQGNIPPELGKLPSLQNFDLSDNNLTGNIPVELFSSSSLLLNLNLSNNDLSGQIPTQIGELSELRYLDLSANNLSGTIPSQLGNCRKLIFLKLSMNKLDGNMPYELGNLLYLQPLLDLSHNSLSGQIITQLGNLISLEVLNLSHNQLSGGIPSGLEGLISLQSVDISYNKLEGHLPNLEAFHNAPAEALVKNAGLCAGPDGNANLSPCGGEKSNKGNKHKLIIAVVIPVAALFILLVSFGIFIFKRYQRVDQDEKDKSSNGKNSFSIWNYRSIIEFKDIRAATDNFSDKHCIGIGGQGSVYKAVLPTGGIFAIKRLHQQEEIDFSGHQEKNFMSEIQALTNIRHRNIVKMCGFSYRDMSMFFIYEYVERGSLGMVLQNEQEANILTWDIRLNIIKGVANALSYLHHDCTPSIVHRDISGNNILLDSEYVPKISDFGTARLLKEGESNWTAPAGSYGYIAPELALTMKVTEKSDVYSFGIVALQILVGKYPHELFLCLESGELDRHFVDFLDKRVDTPVDPAVPLLILAATMILKCLNKDPLYRPTMHQVSQELLSSTSWSLSVPFSMITVQNLLDN 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00046 1206 SUPERFAMILY Protein kinase-like (PK-like) 890 1183 IPR011009 -
Gabi4238g00046 1206 SUPERFAMILY L domain-like 578 828 - -
Gabi4238g00046 1206 Gene3D Transferase(Phosphotransferase) domain 1 997 1191 - -
Gabi4238g00046 1206 PRINTS Leucine-rich repeat signature 764 777 - -
Gabi4238g00046 1206 PRINTS Leucine-rich repeat signature 694 707 - -
Gabi4238g00046 1206 Pfam Leucine rich repeat 643 704 IPR001611 GO:0005515
Gabi4238g00046 1206 Pfam Leucine rich repeat 167 221 IPR001611 GO:0005515
Gabi4238g00046 1206 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Gabi4238g00046 1206 Pfam Leucine rich repeat 453 512 IPR001611 GO:0005515
Gabi4238g00046 1206 Pfam Protein kinase domain 917 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00046 1206 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 199 379 - -
Gabi4238g00046 1206 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1042 1054 IPR008266 GO:0004672|GO:0006468
Gabi4238g00046 1206 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gabi4238g00046 1206 Gene3D Ribonuclease Inhibitor 183 273 IPR032675 -
Gabi4238g00046 1206 SMART LRR_typ_2 186 209 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 475 499 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 788 813 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 451 474 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 138 162 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 691 715 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 306 330 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 764 787 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 403 427 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 90 114 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 642 666 IPR003591 -
Gabi4238g00046 1206 SMART LRR_typ_2 258 282 IPR003591 -
Gabi4238g00046 1206 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 394 494 - -
Gabi4238g00046 1206 FunFam Nuclear pore complex protein NUP107 23 181 - -
Gabi4238g00046 1206 Pfam Leucine Rich Repeat 766 788 IPR001611 GO:0005515
Gabi4238g00046 1206 FunFam Os07g0541700 protein 997 1082 - -
Gabi4238g00046 1206 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 522 842 - -
Gabi4238g00046 1206 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gabi4238g00046 1206 Gene3D Ribonuclease Inhibitor 22 182 IPR032675 -
Gabi4238g00046 1206 Gene3D Ribonuclease Inhibitor 523 837 IPR032675 -
Gabi4238g00046 1206 Gene3D Ribonuclease Inhibitor 375 522 IPR032675 -
Gabi4238g00046 1206 FunFam Leucine-rich repeat receptor protein kinase MSP1 879 996 - -
Gabi4238g00046 1206 SUPERFAMILY RNI-like 73 393 - -
Gabi4238g00046 1206 Gene3D Phosphorylase Kinase; domain 1 877 996 - -
Gabi4238g00046 1206 SUPERFAMILY L domain-like 363 668 - -
Gabi4238g00046 1206 Gene3D Ribonuclease Inhibitor 274 374 IPR032675 -
Gabi4238g00046 1206 PANTHER LEUCINE RICH REPEAT KINASE 2 81 230 - -
Gabi4238g00046 1206 ProSiteProfiles Protein kinase domain profile. 916 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00046 Gabi-Chr4238 375534 379483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00046 7 689 Receptor kinase-like Gene Family AT4G08850 34.170 4.90e-95 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4238g00046 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00046 - - ccaj:109803789 1810.42