Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00044 ATGAAGATAACTTTTCAGCTGGCAATTTTCTCTCTGGTTCTGTCTTGTATACTAGCAGAGATTTCAGCTCAGAAAGAAGCAGAGTCTCTCATTACCTGGATGAAAAGTTTGAACTCTCCCTTCCCGCCTTCATGGAATCTTACAAACAACAGCAATAGTCCATGCAACTGGATTGGCATTACGTGTGATAAAGAAGGCAGTGTTGTTGAGATAATGCTTCCCAATGCAGGCCTAGATGGTACCCTTAACAGGTTTGATTTTTCTGCCTTTCCCAATCTCACTACTTTCAATGTCAATTTGAATAACCTGGTTGGAGAGATACCAGCTGGAATTGGAAAAGCAACAAATATGAAAATACTTGATTTGGGTAGCAACAATTTCACTTATCCAATCCCCCAAGAAATGGGAAACCTCATAGAGTTACAAGTTCTTCGTCTCTCTAACAACTCACTCTTAAAACAAATACCAACTCAACTTAGTAACTTGCAGAAATTATGGCTTCTTGATCTGGAGGGGAATTATTTAGAGAATCCTGACCCTGCTCAATTTAAGGGCATGGCATCCATAACAGAACTCAATCTCAGCTATAACTATCTCACAGAGGTTCCCCCATTTGTTTCTAAATGTCCAAAGTTGGTTTCTCTTGATCTATCACTCAACACCATCACTGGGCAGATTCCAATACAATTACTGGCCAGTACTAGGAACCTGACCATCCTAGTCCTGTCAAACAACTCCTTTGAGGGGCTAATTCCGAAAGAAATTAAGAACCTTTCAAACCTCAAACAGTTAAGACTTGAATATAACAATCTGAGTGGTAATATACCAGAGGAGATCGGTCTCTTGTCAAACCTTGTGGTGCTTGAATTGCATCAAAATGTCTTCCAAGGTCCAATACCATCATCAATTGGAAATCTTCGTATGCTTCAGTATTTGGATCTTCACAATTCAGGGCTGAATTCCAGCATTCCTGATGAGATAGGCTTCTGCACCAACCTTACCTTTCTTGATATGTCAGGAAATAGCCTGACAGGTCCCTTGCCTCTTTCCATGGATTCTTTAACAAGGATCATAGATTTGGGAATCTCTGATAACAATTTATCCGGAGAACTTCATCCATCTCTTGTTTCCAGTTGGCCAGAACTCACTTCTTTACAACTCCAGTTGAATCACCTTTCAGGAAGACTTCCCCCAGAGATTGGTTCACTTCACAATCTAACTCTCCTATCCCTATATAACAACCAGTTTTCTGGACCAATACCTCCGGAAATTGGAAACTTATCAAGCATAGAAGATCTTCAACTGTCCAAGAACTATTTCAGTGGTTCCATCCCATCAGCCATCGGAAAGTTATACAAGCTCCGCAGATTATATTTGGCCTCAAACCAACTAAGTGGGGCCCTTCCTCCTGAAATAGGTGATTTGGAAAGCATAGAGTTGCTGGACTTAAGTGAGAACAATCTTGCAGGACCTTTGCCCTCATCAATAATTCGTTTGAAAAACATCAGTCTCTTTTATCTTTTTTCCAATAATTTCTCAGATAGTATTCCTGAAAATTTTGTACCTACCTTTTTAAGGAATGTGAGCTTTGCCAACAACAGTTTTTCTGGAAAGCTCCCATCAGGAATATGCAAGGGAGGAAATCTCATATTCCTGGCAGCCAATATGAACAATCTATTGGGTCCAATCCCCGAAAGTCTAAGAAACTGCACTGGACTAAACAGAGTCTTGCTTGGAAACAATCTTCTCAGTGGAGACATTACCAATGCATTTGGTATATACCCAGATCTGGACTTAATTGATTTAGGACATAATCAGCTCTCTGGTTCTTTATCAAGTAACTGGGGAGAGTGCAAAAGTCTCTCAAGTTTCAGCATATCTGCCAATAAGGTACAAGGGAATATTCCTCCTGAGCTTGGGAAGTTGCCAAATTTGCAAAAACTTGACCTATCTGACAACAATCTCACAGGATACATCCCTGTGGAAATTTTTGGCTCATCTTCCTTGCTAAACAATCTAAATTTGAATAGCAATGATCTCTCAGGTCAGATACCAGCAGAGATAGGAGAACTTTCAGAGCTGCAGTTTCTGGATTTATCAGCAAACAATCTGAGTGGGGCAATTCCAAACCAACTAGGAAACTGCAGGAAACTTATATCCTTGAAACTGAGCATGAACAAGTTAGAAGGGCATATGCCGTATGAGCTTGGGAATTTGGTTTCCTTGCAGCCTCTTTTAGATCTCAGTCATAACTTACTAAGTGGACAGATAATCACACAGCTGGGAAATCTGATATCCCTGGAGGTTTTGAATCTTTCTCATAACCAGCTTTCTGGGGCAATACCTTCTGGTCTTGAAGGACTTATCAGCCTTCAGTCAGTTGATATATCCTACAACAAACTTGTAGGTCCCCTTCCAAACCTAGAAGCTTTTCATAAAGCTCCAGCAGAAGCTCTGGTGGGTAATGCTGGTCTGTGTAGTGGTCCTGATGGCAGTGCAAATCTGAGCCCATGTGGTGGAGAGAAAAGCAATAAAAAAAGCAATAAAGTTCACAAGCATAAGCTGATAATTGCTGTAGTCATTCCAGTTGCTTCTTCAATCGTTATACTTGTTTCCCTTGGAATATTCTTCTTCCAGCGTTATCAAAGAGTTGATCAAGATGAAAAGGAGGAGAATTCAAACGGAGATAATTCATTCTTCATATGGAATCACAGGAACAGAGTAGAGTTTAAGGATATACGCTCTGCAACTGAGAATTTCAGTGACAAGTATTGCATAGGGATAGGAGGACAGGGCAGTGTCTACAAGGCAGTGCTTCCAACAGGTGACATCTTTGCAGTAAAACGTCTTCACCAACATGATGAAATGGACTTCTCTGAACACCAGACAAATAATTTCATGTATGAAGTTGTTTCATTGACTAATATTCGTCATCGGAATATTGTAAAAATGTGTGGGTTCAATTACTTGGATGGGTCAATATTTTTCATATTCGAGTATGTGGAAAGAGGCTCTTTAAAAAGCGTGTTGCAGAACGACCAGGAGGCAAATACCTTGACATGGGACATCAGGTTAAACATGATAAAAGGAATGGCAAATGCATTGTCCTACCTGCACCATGAATGCACACCCATCATTGTTCACCGAGACATATCAGGAAACAATATTCTTTTGGACTCTGAATATGAGCCTAAGGTCTCTGACTTTGGAACAGCAAGGTTGCTAAAAGATGGAGAATCAAACTGGACTGCTCCAGCTGGTTCATATGGCTATATGGCACCAGAGCTTGCACTTACAATGAAGGTGACAGAAAAATGTGACGTTTACAGTTTTGGAATTGTTGCATTGGAAATTCTGGTGGGGAAGTACCCTCATGAGCTCCTTTTGTGTTTAGAATCTGGGGAATTGGATCAACTCTTTGTAGATTTCATGGATAAGAGGGTAGCTCCTCCAGCAGGTCCTGCCGTCCAAATCCTAATATTGGTTGCAACCCTGATCCTTAAATGCATAAATAAAGATCCTTTGTCCCGACCCAGCATGCATCAAGTGTCCCAAGAACTTGAATCATGTTCCAATGGGTCACTCTCTGTCCCTTTGAGCATGATCACTCTGCAGATTTTGCTGCACAATCATGAAGAAAAATAG 3645 0.4071 MKITFQLAIFSLVLSCILAEISAQKEAESLITWMKSLNSPFPPSWNLTNNSNSPCNWIGITCDKEGSVVEIMLPNAGLDGTLNRFDFSAFPNLTTFNVNLNNLVGEIPAGIGKATNMKILDLGSNNFTYPIPQEMGNLIELQVLRLSNNSLLKQIPTQLSNLQKLWLLDLEGNYLENPDPAQFKGMASITELNLSYNYLTEVPPFVSKCPKLVSLDLSLNTITGQIPIQLLASTRNLTILVLSNNSFEGLIPKEIKNLSNLKQLRLEYNNLSGNIPEEIGLLSNLVVLELHQNVFQGPIPSSIGNLRMLQYLDLHNSGLNSSIPDEIGFCTNLTFLDMSGNSLTGPLPLSMDSLTRIIDLGISDNNLSGELHPSLVSSWPELTSLQLQLNHLSGRLPPEIGSLHNLTLLSLYNNQFSGPIPPEIGNLSSIEDLQLSKNYFSGSIPSAIGKLYKLRRLYLASNQLSGALPPEIGDLESIELLDLSENNLAGPLPSSIIRLKNISLFYLFSNNFSDSIPENFVPTFLRNVSFANNSFSGKLPSGICKGGNLIFLAANMNNLLGPIPESLRNCTGLNRVLLGNNLLSGDITNAFGIYPDLDLIDLGHNQLSGSLSSNWGECKSLSSFSISANKVQGNIPPELGKLPNLQKLDLSDNNLTGYIPVEIFGSSSLLNNLNLNSNDLSGQIPAEIGELSELQFLDLSANNLSGAIPNQLGNCRKLISLKLSMNKLEGHMPYELGNLVSLQPLLDLSHNLLSGQIITQLGNLISLEVLNLSHNQLSGAIPSGLEGLISLQSVDISYNKLVGPLPNLEAFHKAPAEALVGNAGLCSGPDGSANLSPCGGEKSNKKSNKVHKHKLIIAVVIPVASSIVILVSLGIFFFQRYQRVDQDEKEENSNGDNSFFIWNHRNRVEFKDIRSATENFSDKYCIGIGGQGSVYKAVLPTGDIFAVKRLHQHDEMDFSEHQTNNFMYEVVSLTNIRHRNIVKMCGFNYLDGSIFFIFEYVERGSLKSVLQNDQEANTLTWDIRLNMIKGMANALSYLHHECTPIIVHRDISGNNILLDSEYEPKVSDFGTARLLKDGESNWTAPAGSYGYMAPELALTMKVTEKCDVYSFGIVALEILVGKYPHELLLCLESGELDQLFVDFMDKRVAPPAGPAVQILILVATLILKCINKDPLSRPSMHQVSQELESCSNGSLSVPLSMITLQILLHNHEEK 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00044 1214 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Gabi4238g00044 1214 Gene3D Ribonuclease Inhibitor 450 520 IPR032675 -
Gabi4238g00044 1214 SMART LRR_typ_2 186 209 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 451 475 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 90 114 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 642 666 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 162 185 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 306 330 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 258 282 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 691 715 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 138 161 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 403 427 IPR003591 -
Gabi4238g00044 1214 SMART LRR_typ_2 764 788 IPR003591 -
Gabi4238g00044 1214 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 525 1188 - -
Gabi4238g00044 1214 Gene3D Transferase(Phosphotransferase) domain 1 1001 1197 - -
Gabi4238g00044 1214 Pfam Leucine rich repeat 168 221 IPR001611 GO:0005515
Gabi4238g00044 1214 Pfam Leucine rich repeat 643 704 IPR001611 GO:0005515
Gabi4238g00044 1214 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Gabi4238g00044 1214 Gene3D Ribonuclease Inhibitor 22 184 IPR032675 -
Gabi4238g00044 1214 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 275 - -
Gabi4238g00044 1214 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gabi4238g00044 1214 SUPERFAMILY RNI-like 73 393 - -
Gabi4238g00044 1214 SUPERFAMILY Protein kinase-like (PK-like) 896 1188 IPR011009 -
Gabi4238g00044 1214 Gene3D Ribonuclease Inhibitor 376 449 IPR032675 -
Gabi4238g00044 1214 Gene3D Ribonuclease Inhibitor 521 836 IPR032675 -
Gabi4238g00044 1214 Gene3D Ribonuclease Inhibitor 185 375 IPR032675 -
Gabi4238g00044 1214 ProSiteProfiles Leucine-rich repeat profile. 188 209 IPR001611 GO:0005515
Gabi4238g00044 1214 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 522 842 - -
Gabi4238g00044 1214 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1046 1058 IPR008266 GO:0004672|GO:0006468
Gabi4238g00044 1214 SUPERFAMILY L domain-like 577 829 - -
Gabi4238g00044 1214 Pfam Protein kinase domain 923 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00044 1214 PRINTS Leucine-rich repeat signature 645 658 - -
Gabi4238g00044 1214 PRINTS Leucine-rich repeat signature 764 777 - -
Gabi4238g00044 1214 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 394 494 - -
Gabi4238g00044 1214 ProSiteProfiles Protein kinase domain profile. 920 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00044 1214 FunFam Os07g0541700 protein 1001 1086 - -
Gabi4238g00044 1214 Gene3D Phosphorylase Kinase; domain 1 881 1000 - -
Gabi4238g00044 1214 Pfam Leucine Rich repeats (2 copies) 766 809 IPR025875 -
Gabi4238g00044 1214 FunFam Leucine-rich repeat receptor protein kinase MSP1 883 1000 - -
Gabi4238g00044 1214 FunFam Leucine-rich receptor-like protein kinase family protein 276 373 - -
Gabi4238g00044 1214 FunFam Nuclear pore complex protein NUP107 23 180 - -
Gabi4238g00044 1214 SUPERFAMILY L domain-like 372 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00044 Gabi-Chr4238 360353 373502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00044 605 806 Receptor kinase-like Gene Family AT4G08850 35.149 1.94e-17 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4238g00044 Pkinase 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00044 - - ccaj:109803789 1769.21