Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00038 ATGGAGGACTCTAGAAAACACGGTGAGAGCAAAACTAAACTTTTGAATCCATGGATGCTCAACTTCCAGAAACTCGGTCTCGAACTCAAGTGCCCTCTCTGTCTGAGCTTGTTCAAGAGGCCAATGTTACTGCCGTGCAACCACTTGTTCTGCAATTCCTGTTTGGATGATTGCACAACGGCTAGATCTGAATGTGCTGTCTGCAAGGCTCAGTATGCTCAAATAGATGTAAGGCATGTGCCTTTTGTGGAAAACATGGTAGCAATCTATAGAAGCTTGGATGCCACCTTTTGTGCTAATCTGTTTCAGCAACGTTCTTCTGATGATGTGAGGGTTTTGAAGCCATGCCAAGCATTTCCCAAGTCAACTTATTGTGATAAAAAGGCTGTTAAGATTCCACTGAATTTACCAAGTTCTAATGAGGTTGGGGTTTGCAAGAATCACAAATCCAATATTGCAGTGTACCATAAAGCTGAGGAGCTGGATATGTGTTGCGGGGGAGGGGTTGACTTTTGTAGTGCAGGGAAGCCTAATCCAACGCAATCTTCCCTGATGGAAATTGGGGACCGTGAAGACTGTGGAGTTATGGAAATGGATGTGAATTTAGTGACACAATCAGCACCAGGCAGCTCTCCCTTTTGTGATACCAAAGGTTCAGATATTGACTGCAGTGATCAAGACAGTGAGCATCCGTTGCCTCCTGAGAGATTGGAAGATTATTCATTGAAGAGAGCAGGTACTGGAAATGGAAATTTAAAAAAAAGAATGGCACAGTTCAGGCCTGAAAGTTCGGCCTCTGAAACAGAGGGTCTTACGAGAGAGCTGAAGAGACAAAAAAATATTACCTTTGGAGATGATCATATTCAACATAGCACCACACATCATAATAAGCTTGTGGGTTCCCACTCTGGTCAGGACGTTAATTTTGCAAAGGACCCTGGTGCACCGATGCCCGCAAATGCACCAAATGACTTGTATCCAAGCACAAGTATCTGTTCTTTTTGCCAATCCTCTAAAACCTCAGAGGTTACCGGGCCAATGCTGCATTATGCAAATGGGAGTTCAGTTACAGGAGATGCAGCAATGCAACCAAATGTCATACATGTGCATAGGATTTGCATTGATTGGGCACCACAAGTGTATTTTGTTGACGAAGCTATTAAGAATTTGAAGGCTGAAGTAGCTAGGGGAGCAAAGCTTAAATGCAGCAAATGTGGTCTAAAGGGAGCTGCTCTCGGCTGCTACGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGATATCTCAACATGCCGCTGGCATCATGGGGATTTTCTCTTGCTCTGTCCTGTTCATTCTAATGTCAGATTTCCAAATGAGAAATCAAGGCCTAGAAAACACTCAACTGAGAAGCATCTTGCTTCATCTCAACTGCCATTTCAGCAGTTAAACCCTCTGGAAGCTTCGCAGGATGATGGTCAAAAATTGGTTTTTTGTGGATCTGCTCTATCAACCGATGAAAAGGTACATTTGATCAATTTTGCAAGCAGGGTTGGTGCTACAGTGACCAAGTCCTGGACCTCAGATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCTTGCTGCAGGACACTGAAAGTTCTCATGGGAATTCTAAATGGACGATGGATTGTAAAAATGGACTGGATAAAAGCATCCATGGAAGCAATGAATCCAGTAGAAGAAGAACCATATGAAATTAGTCTCGACAACCATGGGTGTTATGGTGGCCCAAAAGCTGGCCGACTTCGGGCATTGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCGATTAAAAAGGAAAATCTTGAAGACTTAGTTAAAGGGGGCGGAGGTTCTGTTTTGAAAAGCAAGGATGAATTGGAAGCAAAAAGACATGAGTGCGAAATTGCTTCAAAGTTGCTGGTTGTTTACGATCCTAATCCCCCACAAGGATGTAAGTTGGGCGATGAAGTTTCAATTATTTGGCAGAGACTGAATGAAGCAGACGAGTTAGCTGCTAATACTGGTTACCAAGTCATTGATTACACGTGGATTCTGGAGTCAATTGCTGCATTTAAGTTGCAGCCTTTTGTTAGCTAA 2142 0.4314 MEDSRKHGESKTKLLNPWMLNFQKLGLELKCPLCLSLFKRPMLLPCNHLFCNSCLDDCTTARSECAVCKAQYAQIDVRHVPFVENMVAIYRSLDATFCANLFQQRSSDDVRVLKPCQAFPKSTYCDKKAVKIPLNLPSSNEVGVCKNHKSNIAVYHKAEELDMCCGGGVDFCSAGKPNPTQSSLMEIGDREDCGVMEMDVNLVTQSAPGSSPFCDTKGSDIDCSDQDSEHPLPPERLEDYSLKRAGTGNGNLKKRMAQFRPESSASETEGLTRELKRQKNITFGDDHIQHSTTHHNKLVGSHSGQDVNFAKDPGAPMPANAPNDLYPSTSICSFCQSSKTSEVTGPMLHYANGSSVTGDAAMQPNVIHVHRICIDWAPQVYFVDEAIKNLKAEVARGAKLKCSKCGLKGAALGCYVKSCRRTYHVPCAMDISTCRWHHGDFLLLCPVHSNVRFPNEKSRPRKHSTEKHLASSQLPFQQLNPLEASQDDGQKLVFCGSALSTDEKVHLINFASRVGATVTKSWTSDVTHVIAATDANGACCRTLKVLMGILNGRWIVKMDWIKASMEAMNPVEEEPYEISLDNHGCYGGPKAGRLRALANEPKLFSGLKFYFSGDYVSIKKENLEDLVKGGGGSVLKSKDELEAKRHECEIASKLLVVYDPNPPQGCKLGDEVSIIWQRLNEADELAANTGYQVIDYTWILESIAAFKLQPFVS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00038 713 SUPERFAMILY BRCT domain 603 710 IPR036420 -
Gabi4238g00038 713 CDD BRCT_Bard1_rpt1 492 567 - -
Gabi4238g00038 713 CDD ePHD 367 448 - -
Gabi4238g00038 713 ProSiteProfiles Extended PHD (ePHD) domain profile. 329 449 IPR034732 -
Gabi4238g00038 713 Pfam Zinc finger, C3HC4 type (RING finger) 28 73 - -
Gabi4238g00038 713 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gabi4238g00038 713 Pfam PHD-like zinc-binding domain 370 449 - -
Gabi4238g00038 713 Pfam BRCT domain, a BRCA1 C-terminus domain 601 710 IPR001357 -
Gabi4238g00038 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 107 IPR013083 -
Gabi4238g00038 713 SMART ring_2 31 68 IPR001841 -
Gabi4238g00038 713 FunFam Breast cancer associated RING 1 16 101 - -
Gabi4238g00038 713 SUPERFAMILY BRCT domain 492 579 IPR036420 -
Gabi4238g00038 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 451 IPR013083 -
Gabi4238g00038 713 ProSiteProfiles BRCT domain profile. 599 713 IPR001357 -
Gabi4238g00038 713 MobiDBLite consensus disorder prediction 220 235 - -
Gabi4238g00038 713 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 179 IPR031099 GO:0006281|GO:0006974
Gabi4238g00038 713 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Gabi4238g00038 713 FunFam Breast cancer associated RING 1 326 451 - -
Gabi4238g00038 713 SMART BRCT_7 486 568 IPR001357 -
Gabi4238g00038 713 SMART BRCT_7 601 706 IPR001357 -
Gabi4238g00038 713 SUPERFAMILY RING/U-box 28 91 - -
Gabi4238g00038 713 MobiDBLite consensus disorder prediction 207 235 - -
Gabi4238g00038 713 FunFam Breast cancer type 1 susceptibility protein homolog 489 595 - -
Gabi4238g00038 713 Pfam BRCA1 C Terminus (BRCT) domain 490 564 IPR001357 -
Gabi4238g00038 713 Gene3D BRCT domain 601 707 IPR036420 -
Gabi4238g00038 713 ProSiteProfiles BRCT domain profile. 488 578 IPR001357 -
Gabi4238g00038 713 Gene3D BRCT domain 489 594 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00038 Gabi-Chr4238 286582 292705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00038 522 635 Core DNA Replication Machinery Family AT4G02110 32.500 2.02e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00038 K10683 - gmx:100784883 1011.52