Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00033 ATGGGGAGGAGTAAGGTTAGGCAGGGGAGGAGATTGCAGAAGATAATGAAGTGCTTGTGTTCGGGGGAGCAGTTAAGAGCAGCAGATGAAATGGTTCCTTGGTCGGAATCTGTTGCATCGAAGGATTATTATTCGGCAAATTCTGGCCGTGATGGACAAGTTGTGAGGAGGAGGCCGGATACAGGCAACATAGAAGAAGCTGAATCGTCCTTACGTGAGAGTGGCATCTTGAACTATGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATATCAGGAAGGAAATATAGAATCCGCTTTACATGTTTTTGAGGGAATAGATATAGGCGCAGTGACTCCCAAGATAAAAATTTCCCTTGCCAAAAGAAGAGAACGCCGTAAGAGACATCCCCAGAATCATACTACTCCACCAATGTCTATACATACTGCTGGATTACTGTTGGAAGCAGTTTTCCTTAAAGCAAAATGCTTGCAGGCTCTTGGGAGGTTTAAAGAAGCTGCCCAAACTTGCAAAGTTATTTTGGACATAGTTGAGTCTTCATTACCTGAAGGCTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGATTGTCCCCGTGAAGTTATTTTATCTTATCGGCATGCGCTCCTTCCTCAGTGGAATCTTGATTCAGAGACCAAAGCAAAGATACAGAAAGAATTTGTTATTTTTCTTCTATATAGCGGAGGGGAAGTAATCCCCCCAAATCTTCGTTCTCATATGGACAGCTCATTTGTACCCACAAACAACATAGAGGAGGCTATACTTCTTTTAATGATTTTGCTAAGAGAAGTCTCTCTAAATAAAATTGAATGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAGTCAATGGGAAGAATTGCTTCCTGGGACTATCAATCGAAGAGAAAGATACCATGCCCTTGCTCTTTGTTATTATGGGGCAGGTAAGGACTTGGCAGCACTGAATCTTCTTCTAAAATTGTTGAGTAGCAGAGAGGACCCGAAACATGTTCCTGCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCTGATCTTGCAAAAGATGGGGTAAGCTTTGCTCGCAGAATGCTTGATAACTTGGATGGAAGATGTGATCAGTTCGAAAGTCTTGCCAATTGCTTACTTGGTGTTTCACTTTCAGCACACTCAAAATTGGCTATTTCTGATTCTGAGAGGTTTGAGAGACAGTCCGAGGCACTTCATTTCCTGGAAACTGCGGTCAGAATGACCAGAATGTGTGAACCCCTTTTACTGTACCATTTCAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCTGCACTTCATTACGCCGAATGCTTTCTAAACTTGGAAGTTGGATCTAATGTTAAAGGGTGGTTATTGTTAGCCCGGATATTATCAGCTCAAAAGCAGTTTTTGGATGCTGAATCCATTGTCAATGCTGCTTTGGATCAAACTGGAATATGGGACCAAGGAGATTTGTTACGGACAAAAGCTAAACTGCAAACTGCACAGGGCCAGTTAACGAGTGCCATTGAAACATATAGTCAGCTACTTGCTATTCTTCTAGTTCAGAGAAAAGCTTTTGGTTCAAGGAAGAAGCTATACAAGGACTACAGAGATCATGCTAGGAACTTGGAAGTGGAAATTTGGCATGATCTTGCTTATGTATACATAAGTCTGTCACAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGCCTTTACAAAGAGGCTCTAAAAGCTTTTCGTGAAGCTTTGAACATTGATCCCGGACATGTCCCTAGCTTGATCTCGGCTGCTGTGGTTATAAGACGGTGCAGTAATCAATCAAATCCTCCTGTCAGAAGCTTTCTGATGGATGCACTGAGGCATGACAGATTTAATGCTTCTGCTTGGTATAATCTTGGCATTCTCCACAAAGCTGAGGGTAAAATGTTAGAAGCTGCAGAATGTTTTGAGACAGCAAACTTTCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2175 0.4202 MGRSKVRQGRRLQKIMKCLCSGEQLRAADEMVPWSESVASKDYYSANSGRDGQVVRRRPDTGNIEEAESSLRESGILNYEEARALLGRYEYQEGNIESALHVFEGIDIGAVTPKIKISLAKRRERRKRHPQNHTTPPMSIHTAGLLLEAVFLKAKCLQALGRFKEAAQTCKVILDIVESSLPEGLPENFGAECKLQETLSKAVELLPELWKLADCPREVILSYRHALLPQWNLDSETKAKIQKEFVIFLLYSGGEVIPPNLRSHMDSSFVPTNNIEEAILLLMILLREVSLNKIEWDPSILDHLSFALSVSGDLTALASQWEELLPGTINRRERYHALALCYYGAGKDLAALNLLLKLLSSREDPKHVPALLMASKICCENPDLAKDGVSFARRMLDNLDGRCDQFESLANCLLGVSLSAHSKLAISDSERFERQSEALHFLETAVRMTRMCEPLLLYHFSLECAEQRKLDAALHYAECFLNLEVGSNVKGWLLLARILSAQKQFLDAESIVNAALDQTGIWDQGDLLRTKAKLQTAQGQLTSAIETYSQLLAILLVQRKAFGSRKKLYKDYRDHARNLEVEIWHDLAYVYISLSQWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGLYKEALKAFREALNIDPGHVPSLISAAVVIRRCSNQSNPPVRSFLMDALRHDRFNASAWYNLGILHKAEGKMLEAAECFETANFLEESAPVEPFR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00033 724 Gene3D Tetratricopeptide repeat domain 464 719 IPR011990 GO:0005515
Gabi4238g00033 724 SMART tpr_5 685 718 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 581 614 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 489 522 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 147 180 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 525 558 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 332 365 IPR019734 GO:0005515
Gabi4238g00033 724 SMART tpr_5 615 648 IPR019734 GO:0005515
Gabi4238g00033 724 Gene3D Tetratricopeptide repeat domain 127 414 IPR011990 GO:0005515
Gabi4238g00033 724 ProSiteProfiles TPR repeat profile. 685 718 IPR019734 GO:0005515
Gabi4238g00033 724 SUPERFAMILY TPR-like 433 606 IPR011990 GO:0005515
Gabi4238g00033 724 Pfam Tetratricopeptide repeat 618 648 IPR013105 -
Gabi4238g00033 724 SUPERFAMILY TPR-like 527 711 IPR011990 GO:0005515
Gabi4238g00033 724 PANTHER PROTEIN NPG1 16 724 IPR043376 -
Gabi4238g00033 724 SUPERFAMILY TPR-like 147 364 IPR011990 GO:0005515
Gabi4238g00033 724 ProSiteProfiles TPR repeat profile. 615 648 IPR019734 GO:0005515
Gabi4238g00033 724 Pfam Tetratricopeptide repeat 685 711 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00033 Gabi-Chr4238 233461 241249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00033 10 724 Calmodulin-binding Proteins AT4G28600 55.951 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00033 K21843 - gmx:100784353 1116.29