Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00017 ATGATGGATCATGTGATTGCTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGCAATTGACCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCATCGTGACATAAAGCCTGACAATTTTTTAATGGGCTTAGGACGTAAAGCAAACCAGGTGTACGTCATTGACTATGGTCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCCAGTGTCAACACTCATCTAGGAGTTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATACGATAAAATCAGTGAGAAGAAGATGTCAACTCCTATAGAGGTGCTCTGCAAATCATATCCTTCAGAGTTTGTATCATATTTCCATTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTGTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCGCCTGTTGGTAGCAGCAGCTCTAGAGGGCGGGAAGCTATGAATGCAGGACCATCTGTACAAAAGCCAGAAAAGATCTCAGTGGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAGCATTCTCCCGGAGGAACCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGACTTTTGAGGATTATCATGATCAAGAGAAGGGACGCAGTACCTCACGATATGGGAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACGAGGCCAAGTTCCTCAGGTGATCACACTGACAGCCGTACCGGCCGGCTAACCTCAACCGGTAGCCGTCCATCCACCACGCATAGAAGTCAACAACCAACTTTCACACGCTCAGGATCTACTAGAGCCAATCGCGATGATCCTCTGCGTAGCTTTGAGCTCCTCTCTATCAGGAAGTAA 1338 0.4372 MMDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPPVGSSSSRGREAMNAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRTFEDYHDQEKGRSTSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSTGSRPSTTHRSQQPTFTRSGSTRANRDDPLRSFELLSIRK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00017 445 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Gabi4238g00017 445 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Gabi4238g00017 445 SMART serkin_6 10 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00017 445 FunFam Putative Casein kinase I 2 86 - -
Gabi4238g00017 445 MobiDBLite consensus disorder prediction 322 336 - -
Gabi4238g00017 445 MobiDBLite consensus disorder prediction 348 370 - -
Gabi4238g00017 445 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00017 445 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Gabi4238g00017 445 MobiDBLite consensus disorder prediction 429 445 - -
Gabi4238g00017 445 FunFam Casein kinase 1-like protein 2 327 - -
Gabi4238g00017 445 MobiDBLite consensus disorder prediction 301 445 - -
Gabi4238g00017 445 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00017 445 CDD STKc_CK1_delta_epsilon 9 283 - -
Gabi4238g00017 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gabi4238g00017 445 MobiDBLite consensus disorder prediction 371 428 - -
Gabi4238g00017 445 PANTHER CASEIN KINASE-RELATED 9 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00017 Gabi-Chr4238 152103 158193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00017 3 214 Miscellaneous Gene Families AT1G29230 27.397 4.17e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi4238g00017 Pkinase 5.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00017 K08960 - gmx:100781494 802.357