Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00013 ATGATGGATCATGTGATTGCTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGCAATTGACCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTGATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAGGTTTCCTTCATCGTGACATAAAGCCTGACAATTTTTTAATGGGCTTAGGACGTAAAGCAAACCAGGTGTACGTCATTGACTATGGTCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCCAGTGTCAACACTCATCTAGGAGTTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATACGATAAAATCAGTGAGAAGAAGATGTCAACTCCTATAGAGGTGCTCTGCAAATCATATCCTTCAGAGTTTGTATCATATTTCCATTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTGTTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCGCCTGTTGGTAGCAGCAGCTCTAGAGGGCGGCATGGTGGTGGCAAGGAAGCTATGAATGCAGGACCATCTGTACAAAAGCCAGAAAAGATCTCAGTGGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAGCATTCTCCCGGAGGAACCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGACTTTTGAGGATGTAGCAGTACATAAAGATAAGGGACGCAGTACCTCACGATATGGGAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACGAGGCCAAGTTCCTCAGGTGATCACACTGACAGCCGTACCGGCCGGCTAACCTCAACCGGTAGCCGTCCATCCACCACGCATAGAAGTCAACAACCAACTTTCACACGCTCAGGATCTACTAGAGCCAATCGCGATGATCCTCTGCGTAGCTTTGAGCTCCTCTCTATCAGGAAGTAA 1356 0.4388 MMDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPPVGSSSSRGRHGGGKEAMNAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRTFEDVAVHKDKGRSTSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSTGSRPSTTHRSQQPTFTRSGSTRANRDDPLRSFELLSIRK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00013 451 SMART serkin_6 10 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00013 451 MobiDBLite consensus disorder prediction 435 451 - -
Gabi4238g00013 451 MobiDBLite consensus disorder prediction 380 434 - -
Gabi4238g00013 451 FunFam Putative Casein kinase I 2 86 - -
Gabi4238g00013 451 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Gabi4238g00013 451 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Gabi4238g00013 451 PANTHER CASEIN KINASE-RELATED 9 397 - -
Gabi4238g00013 451 MobiDBLite consensus disorder prediction 327 341 - -
Gabi4238g00013 451 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00013 451 CDD STKc_CK1_delta_epsilon 9 283 - -
Gabi4238g00013 451 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Gabi4238g00013 451 MobiDBLite consensus disorder prediction 301 451 - -
Gabi4238g00013 451 FunFam Casein kinase 1-like protein 2 332 - -
Gabi4238g00013 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gabi4238g00013 451 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4238g00013 451 MobiDBLite consensus disorder prediction 353 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00013 Gabi-Chr4238 151579 158188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00013 3 214 Miscellaneous Gene Families AT1G29230 27.397 5.38e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gabi4238g00013 Pkinase 5.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00013 K08960 - gmx:100781494 809.675