Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00010 ATGGGTCTTAGAGACATCGGTGCTTCGCTGCCTCCAGGGTTTCGGTTTTATCCGAGTGATGAAGAGTTGGTATGTCATTATCTTCACAAAAAGATCACAAATGAGGAAGTTCTGAAGGATACCTTGGTGGAAATTGACTTGCACATATGCGAACCATGGCAGCTTCCAGAGGTGGCTAAGCTCAATGCAAACGAATGGTACTTCTTCAGCTTTCGGGACCGCAAATATGCTACTGGATTTAGAGCCAACCGGGCCACCTCATCTGGATATTGGAAAGCAACAGGGAAGGATCGTACGGTGCTTGATCCGATGACGCAGGAGGTTGTAGGAATGAGGAAGACATTGGTGTTCTATAGGAACAGAGCTCCAAATGGCATCAAAACAGGATGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCCAAGGAGGACTGGGTGTTGTGCAGAGTCTTCAACAAAAGCAAAGAAGATAATAGTTCCAAACTCAGTTCACAACTCATGTATGATACCACAACTCCATCCCTAACTTTGGTTTCATCATCTCCATCCAACCAAACCATGCCTGGTGGGTATAACAGACATGCCTCTTTCTCTTCCTTGATGGCAACCCATCATCATCATCTTCATCATCATTTAAACCCGAACCAAAACAGTTCTTCAATGAATCTCCTTCAGTTTTCTCGGGAAACAAACACCAACAGTAGCACTGTTACTCAAATTAGTTCCAGATGTGATGATGGATATGACTTCTTATGGGACATGGATAATAGCCTAGAAGATGGCGTGGCCTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATAATAATAATATGGTCTTGTTATAA 861 0.4379 MGLRDIGASLPPGFRFYPSDEELVCHYLHKKITNEEVLKDTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRANRATSSGYWKATGKDRTVLDPMTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFNKSKEDNSSKLSSQLMYDTTTPSLTLVSSSPSNQTMPGGYNRHASFSSLMATHHHHLHHHLNPNQNSSSMNLLQFSRETNTNSSTVTQISSRCDDGYDFLWDMDNSLEDGVASNLDAIRFEVDNNNNNMVLL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00010 286 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 228 - -
Gabi4238g00010 286 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Gabi4238g00010 286 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gabi4238g00010 286 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gabi4238g00010 286 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00010 Gabi-Chr4238 88128 93141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00010 6 159 NAC Transcription Factor Family AT1G56010 57.407 7.83e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4238g00010 NAM 8.4e-38 No_clan