Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00007 ATGGAAGCAGACTATGGAAGTAATTGTGCCAAAATTGAGAAGATGGGAAATCTTTCTGTTCCCCCTGGTTTTGCATCCTTAACATCTTTCAATTTGAAAAGGGTTGGAAAGGTTAAGAAAACCGATAAATCGACAACTGCATCTGAACATGAGCCAGTCCATGTGGAAATTAAACCTGAGATGAATGGAATTACTGCATATAACCAGATTCTTATGCATCGCCCGTGGATAATCTTGGACCAGAGCAACCAAAAACCTGAGGAATCTCACACAGAGCATCTTCCTATGGATATCCCTTCAAATGCTTGTCGTCCAAAAGGAACTATACGTGGATGTCCAAATTGCAGTAATTGTCTGAAGGTAACAGCAAGGTGGAATCCTGAGGATGCAAGAAGAGAAGTCCTGGAAGAAGCTCCTATTTTTCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTATGGAATTTGTCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGTCTTCTTGAGGAAAAGAACATATGGGAAAACTCCGAATTTGTTGCTCAAGTTCAACGAATTGATGGACACCAAATTCAGCATGCAAAAGAAATTATGGCTAGCTCTTGTGAAAATACAAAGACAAAGAGAAGAAGAGGCACAAAAGTAGCTTTGGACTCTCAGCTTGGTAATAGAAGCACTTGCACAACAAATAACCAGAATATTGAGGACTATGAGTCTGAACCCGGTCCAAAATTCAGTCTCAAAACGTTTAAGAAACATGCAGATGAGTTCAAGATCCAGTACTTCAATTACAAGGAGAAGAATAAGATCATGGATTCTGATATAAATTTAGCTATACATCAACAGCAGTGGGAGCCATCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTGCTTTGTGGTAACACTTTGGAGGCTGGAGTTTTTATCAGTGGATTTCCAACAGTTTCTGGTCCTTTGGAGACATGCCCTTACCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATACTTTCACTGTTGGGGTCTCTTCTTTCTTTTGAAAGCTCCGAAGCTTCACGCAATTTTGCCCCTCGGATTCATGTAGGGATGTGCTTTTCTCCTCTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTACATGCATCTGGGTGGACCTAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCAGTTAACTTTGAAACAATTCAGAAGAAGTATCTCCCAGATCTGTGTGCCAGGCAGCCTGATATGCATGATAATCTGGTGATGCAATTATCCTGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGCGTACAGTATCCTCGTGAGTTTGTTCTTGTCTTCCCAGGAGCATATAATTCAGGATTTGATTGTGGTTTCAACTGTATTGAAGCAGTAAGTTTTACTCCTCTGGAGTGGCTGCTTCATGGACAGAATGTTGTAGAGCTATATTGTGAACAGAGGCGAAAGACAATAATTTCATATGATAAACTTTTGTTGGGAGCAGCAAGGGAAGCTGTGAGGGCACAATGGGAAACTGATTTGTGTATGAAGAGCACGCCAGACAAGTTAACATGTAAAGATGCCTATCAAAGAAATGGGATCTTAGCAAAAGTTTTGGAATCTCGCGTCAAGAGTGAAAGTTTGAAGAGGGAATTTCTTTGCATTTCTTTGATATCTGGAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATATGCCTGCGTGATTTACACTTGTCTGCCATATGTTGTTCATGTTCAGAAGACAAGTTTGCGTGTCTTAATCATGCAAAACAGCTTTGTTTTTGCCCTTGGAGCAACAAAACTCTCCTCTACCGTTACGAAATCAGTGAATTGAATGTTCTTTGTCAAGCTGTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAGGATCTTGGATTAACTGTGCACTCTCTTGCCTCCAAGAGATCAAACCAAACCCCAGAAAATGTTGGTGGTTCAACCCACCCTTCTAAAGACTTGAAGATGAAAGAACCTATGCCCCATACAGGAAGTGATGCATGCTCGGAGTGGAAACAACTTAAATCGCAGGCAATATCAAATGCATCAAAAAGGAAACAAAATGAAGTGGCCTCCCAAGTCAAGGGAACTTCTAGTAGTTCTTATGGCTTTCATTCAAAAATGAAGACAACTTTACTTCAGTCAACAATCCCAGATGAGATAAAAGCAAAAGAGAAAATGCCTCCAAAAAGCATTAGTGGAGGAAAAAATGCTGCTGGCATAAAAAATGATATGAAGGCACTTGCAGGTAAGCGTACAATTTCAAAGAAAGTAGAAGGAGACCCAAAAGTATCTAAGGTTTCTTCAGTTACAAACTCAAATTACTTGTCTTTTCTACAAGAAAACACATTATTTGAAATTTCATCTGATAGTAGTAGCACATCTACGTCTTCAGAATCAGATGATGACACATAA 2574 0.3978 MEADYGSNCAKIEKMGNLSVPPGFASLTSFNLKRVGKVKKTDKSTTASEHEPVHVEIKPEMNGITAYNQILMHRPWIILDQSNQKPEESHTEHLPMDIPSNACRPKGTIRGCPNCSNCLKVTARWNPEDARREVLEEAPIFHPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTCWKPPCLLEEKNIWENSEFVAQVQRIDGHQIQHAKEIMASSCENTKTKRRRGTKVALDSQLGNRSTCTTNNQNIEDYESEPGPKFSLKTFKKHADEFKIQYFNYKEKNKIMDSDINLAIHQQQWEPSVENIEGEYGRIVQNPTEEIEVLCGNTLEAGVFISGFPTVSGPLETCPYPEYLKSGWNLNNILSLLGSLLSFESSEASRNFAPRIHVGMCFSPLNWKVEEHHLYSLSYMHLGGPKVWYSVPGRFAVNFETIQKKYLPDLCARQPDMHDNLVMQLSCSILKAEGIPVYRCVQYPREFVLVFPGAYNSGFDCGFNCIEAVSFTPLEWLLHGQNVVELYCEQRRKTIISYDKLLLGAAREAVRAQWETDLCMKSTPDKLTCKDAYQRNGILAKVLESRVKSESLKREFLCISLISGRMDENFDATCKRECSICLRDLHLSAICCSCSEDKFACLNHAKQLCFCPWSNKTLLYRYEISELNVLCQAVDGKLSAVYKWAKEDLGLTVHSLASKRSNQTPENVGGSTHPSKDLKMKEPMPHTGSDACSEWKQLKSQAISNASKRKQNEVASQVKGTSSSSYGFHSKMKTTLLQSTIPDEIKAKEKMPPKSISGGKNAAGIKNDMKALAGKRTISKKVEGDPKVSKVSSVTNSNYLSFLQENTLFEISSDSSSTSTSSESDDDT 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00007 857 MobiDBLite consensus disorder prediction 218 254 - -
Gabi4238g00007 857 PANTHER LYSINE-SPECIFIC DEMETHYLASE 132 779 - -
Gabi4238g00007 857 Pfam C5HC2 zinc finger 607 657 IPR004198 -
Gabi4238g00007 857 ProSiteProfiles JmjC domain profile. 351 517 IPR003347 -
Gabi4238g00007 857 SMART JmjN_1 137 178 IPR003349 -
Gabi4238g00007 857 Pfam jmjN domain 139 172 IPR003349 -
Gabi4238g00007 857 MobiDBLite consensus disorder prediction 722 755 - -
Gabi4238g00007 857 Gene3D Cupin 123 501 - -
Gabi4238g00007 857 ProSiteProfiles JmjN domain profile. 138 179 IPR003349 -
Gabi4238g00007 857 MobiDBLite consensus disorder prediction 232 251 - -
Gabi4238g00007 857 Pfam JmjC domain, hydroxylase 386 500 IPR003347 -
Gabi4238g00007 857 MobiDBLite consensus disorder prediction 689 755 - -
Gabi4238g00007 857 SUPERFAMILY Clavaminate synthase-like 255 543 - -
Gabi4238g00007 857 SMART cupin_9 351 517 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00007 Gabi-Chr4238 62336 68914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00007 9 716 JUMONJI Transcription Factor Family AT1G08620 46.995 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4238g00007 JmjC 5.1e-28 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00007 K11446 - gmx:100804864 1222.22