Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00002 ATGATAGTTAGATTCCTAAAGTCACCTGCATCAGTTTCCGTTTTGGCTAATCTTCAGCACTATATACAGGAACTCCAGTGTCTTAAGAAAGAACAAGCAATGATCTATATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAACCTTGCTATGAACATCTAAAGGAAATGATAGAGTTACTTGAATTTACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGGCGATAAAACCAAAGGGAACATGGATGAAATTAACCAAATTGTGAATCTTATGTGCAATTTACGTGATTATGTAATGAAAATTGAGTGCTCTGAAGTCAAAAGTAGTGTCTCAATCCCACCATACTTTCGATGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCACGGTCTGACTGTTTGTCCCAAGACTCATCAAAGACTTACCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGATGAAAATAATGTCAAACTTTCCATTAACTCGAAACACAGTAATTCTGCCCATATTTCGTCCCCGTCAGATTATTTATTGCATCATGATTTAGATCGTGTGTGTAGTTTTTCTTCTTTACATAGTAGCAATTCCAATTCAAGATCATCTTTTCAAACTGGAAATGCATTTGAGAAGAAAAAGGGTGATAACGCTTTCAGATTAAGTGGAGAATCCAATGGAAGCCAGAGTGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTTACAGCAGGAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTCAAAAGAGATGCCAGGGATATCTAATAAGCATCAAAATGTGGAGTTGTCTGGAGAAATTACTAATGGCTGTCCTGCTTCCCTTGCAAAAAAAGAACCAGGAATTTCTCCTTGGTTATCAGAAAAGCAACTTCAAAGCCCTGGATCAAAAATGGGACAGATGGAGATTGGAAATATGGATATTAAGAATAATAATATTATTATTACTAGCCATTCAAAAGTTGATTCCCATCCTGTTTCCAACTTAGGATCTGATGAACTGACCACCACATCTCATGTCAATAAGTTGATTGAAGACCTCCACAGTCAATCAAATGAAACACAGACTGCCGCTGCAGAAGAATTGAGGCTATGTACTAAGCATAATATGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTATCCGGCCTTTACTCTCACTGCTATATTCAGACATACAGATAACACAAGAACATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGCCAACAAGGCCTTGATTACGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATGGTGCCAGGGAGAATTCGGCTGCAGCTCTATTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTGGCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGCTATTGAACCCTGCTGATGGATTGGTTGACAAAGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGTCGATTAGGAATTGCAAGGGAAGGGGGTATCCCGTTACTGGTTGAAATTGTTGAATCAGGTTCACAGAGGGGAAAGGAAAATGCTGCTTCAATTCTCTTGCAACTATGTCTTCATAGTCGTAAGTTTTGTACCCTCATTCTCCAAGAAGGGGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACAACAAGAGCAAAGGAAAAGGCGCAACAACTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGCTACAGGGAAGGGAAAATCATGA 2049 0.3968 MIVRFLKSPASVSVLANLQHYIQELQCLKKEQAMIYIEEALRNQRDNIEPCYEHLKEMIELLEFTSNQELLKESIAVEKERLNAEGDKTKGNMDEINQIVNLMCNLRDYVMKIECSEVKSSVSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTHQRLTHTNLIPNYTVKAMIANWCDENNVKLSINSKHSNSAHISSPSDYLLHHDLDRVCSFSSLHSSNSNSRSSFQTGNAFEKKKGDNAFRLSGESNGSQSGETEKFEQQSPAPSCSYSRSESFSSSISSTDYVLPVSKEMPGISNKHQNVELSGEITNGCPASLAKKEPGISPWLSEKQLQSPGSKMGQMEIGNMDIKNNNIIITSHSKVDSHPVSNLGSDELTTTSHVNKLIEDLHSQSNETQTAAAEELRLCTKHNMENRIIVGQCGAIRPLLSLLYSDIQITQEHAVTALLNLSINEANKALITEAGAIEPLIHVLQTGNDGARENSAAALFSLSVIDNNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLNPADGLVDKAVALLANLSTIAEGRLGIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSRKFCTLILQEGAVPPLVALSQSGTTRAKEKAQQLLSHFRNQREGATGKGKS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00002 682 MobiDBLite consensus disorder prediction 259 288 - -
Gabi4238g00002 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 199 IPR013083 -
Gabi4238g00002 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 560 601 IPR000225 GO:0005515
Gabi4238g00002 682 Pfam Armadillo/beta-catenin-like repeat 510 547 IPR000225 GO:0005515
Gabi4238g00002 682 Pfam Armadillo/beta-catenin-like repeat 428 465 IPR000225 GO:0005515
Gabi4238g00002 682 Pfam Armadillo/beta-catenin-like repeat 467 506 IPR000225 GO:0005515
Gabi4238g00002 682 SMART Ubox_2 127 190 IPR003613 GO:0004842|GO:0016567
Gabi4238g00002 682 MobiDBLite consensus disorder prediction 254 288 - -
Gabi4238g00002 682 SUPERFAMILY RING/U-box 122 197 - -
Gabi4238g00002 682 FunFam RING-type E3 ubiquitin transferase 380 675 - -
Gabi4238g00002 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Gabi4238g00002 682 CDD RING-Ubox_PUB 125 177 IPR045210 -
Gabi4238g00002 682 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Gabi4238g00002 682 Gene3D - 377 676 IPR011989 -
Gabi4238g00002 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Gabi4238g00002 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Gabi4238g00002 682 FunFam RING-type E3 ubiquitin transferase 123 198 - -
Gabi4238g00002 682 ProSiteProfiles U-box domain profile. 123 197 IPR003613 GO:0004842|GO:0016567
Gabi4238g00002 682 Pfam U-box domain 124 194 IPR003613 GO:0004842|GO:0016567
Gabi4238g00002 682 PANTHER U BOX DOMAIN-CONTAINING 35 670 - -
Gabi4238g00002 682 SMART arm_5 508 548 IPR000225 GO:0005515
Gabi4238g00002 682 SMART arm_5 549 588 IPR000225 GO:0005515
Gabi4238g00002 682 SMART arm_5 426 466 IPR000225 GO:0005515
Gabi4238g00002 682 SMART arm_5 589 629 IPR000225 GO:0005515
Gabi4238g00002 682 SMART arm_5 467 507 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00002 Gabi-Chr4238 3080 7961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00002 8 682 U-box Gene Family AT3G54790 54.265 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4238g00002 - - gmx:100804684 1068.14