Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4238g00001 ATGCATATAGGTCAAACGGATACAACTTCTGTTAAATGTCTTATCAACAGCATCTCTCGATTCATTCATCTAGTTTCTTGCCAAATAGTGAAACCTATGCCCCTTCAGAAGAACATTAATAATATGGTTGGTGTGTTAAAGCATTTGAAACCCGTGCTTGATGATGTTGTGGATTACAAAATCCCTTTGGATGAAAATCTGTATAGAGAATGTGAAGAATTGGACATTCGGGTTAATAAAGCTAGGGAGTTCATTGAAAATTGGTACTCAAAGATGAGCAAGATTCATAGTGTTCTTCAAAGTGGGGAATTGTTGATTAAGTTACAGGGCGCTTCACTTAAGATTTGTCATATGATAGTTAGATTCCTAAAGTCACCTGCATCAGTTTCCGTTTTGGCTAATCTTCAGCACTATATACAGGAACTCCAGTGTCTTAAGAAAGAACAAGCAATGATCTATATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAACCTTGCTATGAACATCTAAAGGAAATGATAGAGTTACTTGAATTTACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAAGGCGATAAAACCAAAGGGAACATGGATGAAATTAACCAAATTGTGAATCTTATGTGCAATTTACGTGATTATGTAATGAAAATTGAGTGCTCTGAAGTCAAAAGTAGTGTCTCAATCCCACCATACTTTCGATGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCACGGTCTGACTGTTTGTCCCAAGACTCATCAAAGACTTACCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGATGAAAATAATGTCAAACTTTCCATTAACTCGAAACACAGTAATTCTGCCCATATTTCGTCCCCGTCAGATTATTTATTGCATCATGATTTAGATCGTGTGTGTAGTTTTTCTTCTTTACATAGTAGCAATTCCAATTCAAGATCATCTTTTCAAACTGGAAATGCATTTGAGAAGAAAAAGGGTGATAACGCTTTCAGATTAAGTGGAGAATCCAATGGAAGCCAGAGTGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTTACAGCAGGAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACTTCCAGTTTCAAAAGAGATGCCAGGGATATCTAATAAGCATCAAAATGTGGAGTTGTCTGGAGAAATTACTAATGGCTGTCCTGCTTCCCTTGCAAAAAAAGAACCAGGAATTTCTCCTTGGTTATCAGAAAAGCAACTTCAAAGCCCTGGATCAAAAATGGGACAGATGGAGATTGGAAATATGGATATTAAGAATAATAATATTATTATTACTAGCCATTCAAAAGTTGATTCCCATCCTGTTTCCAACTTAGGATCTGATGAACTGACCACCACATCTCATGTCAATAAGTTGATTGAAGACCTCCACAGTCAATCAAATGAAACACAGACTGCCGCTGCAGAAGAATTGAGGCTATGTACTAAGCATAATATGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTATCCGGCCTTTACTCTCACTGCTATATTCAGACATACAGATAACACAAGAACATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGCCAACAAGGCCTTGATTACGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATGGTGCCAGGGAGAATTCGGCTGCAGCTCTATTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTGGCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATATTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGCTATTGAACCCTGCTGATGGATTGGTTGACAAAGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGTCGATTAGGAATTGCAAGGGAAGGGGGTATCCCGTTACTGGTTGAAATTGTTGAATCAGGTTCACAGAGGGGAAAGGAAAATGCTGCTTCAATTCTCTTGCAACTATGTCTTCATAGTCGTAAGTTTTGTACCCTCATTCTCCAAGAAGGGGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACAACAAGAGCAAAGGAAAAGGCGCAACAACTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGCTACAGGGAAGGGAAAATCATGA 2400 0.3917 MHIGQTDTTSVKCLINSISRFIHLVSCQIVKPMPLQKNINNMVGVLKHLKPVLDDVVDYKIPLDENLYRECEELDIRVNKAREFIENWYSKMSKIHSVLQSGELLIKLQGASLKICHMIVRFLKSPASVSVLANLQHYIQELQCLKKEQAMIYIEEALRNQRDNIEPCYEHLKEMIELLEFTSNQELLKESIAVEKERLNAEGDKTKGNMDEINQIVNLMCNLRDYVMKIECSEVKSSVSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTHQRLTHTNLIPNYTVKAMIANWCDENNVKLSINSKHSNSAHISSPSDYLLHHDLDRVCSFSSLHSSNSNSRSSFQTGNAFEKKKGDNAFRLSGESNGSQSGETEKFEQQSPAPSCSYSRSESFSSSISSTDYVLPVSKEMPGISNKHQNVELSGEITNGCPASLAKKEPGISPWLSEKQLQSPGSKMGQMEIGNMDIKNNNIIITSHSKVDSHPVSNLGSDELTTTSHVNKLIEDLHSQSNETQTAAAEELRLCTKHNMENRIIVGQCGAIRPLLSLLYSDIQITQEHAVTALLNLSINEANKALITEAGAIEPLIHVLQTGNDGARENSAAALFSLSVIDNNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLNPADGLVDKAVALLANLSTIAEGRLGIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSRKFCTLILQEGAVPPLVALSQSGTTRAKEKAQQLLSHFRNQREGATGKGKS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4238g00001 799 Gene3D - 494 793 IPR011989 -
Gabi4238g00001 799 MobiDBLite consensus disorder prediction 376 405 - -
Gabi4238g00001 799 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Gabi4238g00001 799 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Gabi4238g00001 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Gabi4238g00001 799 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Gabi4238g00001 799 FunFam RING-type E3 ubiquitin transferase 497 792 - -
Gabi4238g00001 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 596 IPR000225 GO:0005515
Gabi4238g00001 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 678 IPR000225 GO:0005515
Gabi4238g00001 799 PANTHER U BOX DOMAIN-CONTAINING 34 787 - -
Gabi4238g00001 799 Pfam U-box domain 241 311 IPR003613 GO:0004842|GO:0016567
Gabi4238g00001 799 SMART arm_5 706 746 IPR000225 GO:0005515
Gabi4238g00001 799 SMART arm_5 666 705 IPR000225 GO:0005515
Gabi4238g00001 799 SMART arm_5 584 624 IPR000225 GO:0005515
Gabi4238g00001 799 SMART arm_5 543 583 IPR000225 GO:0005515
Gabi4238g00001 799 SMART arm_5 625 665 IPR000225 GO:0005515
Gabi4238g00001 799 Pfam Armadillo/beta-catenin-like repeat 584 623 IPR000225 GO:0005515
Gabi4238g00001 799 Pfam Armadillo/beta-catenin-like repeat 545 582 IPR000225 GO:0005515
Gabi4238g00001 799 Pfam Armadillo/beta-catenin-like repeat 627 664 IPR000225 GO:0005515
Gabi4238g00001 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Gabi4238g00001 799 SUPERFAMILY ARM repeat 510 786 IPR016024 -
Gabi4238g00001 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 718 IPR000225 GO:0005515
Gabi4238g00001 799 SUPERFAMILY RING/U-box 239 314 - -
Gabi4238g00001 799 CDD RING-Ubox_PUB 242 294 IPR045210 -
Gabi4238g00001 799 MobiDBLite consensus disorder prediction 371 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4238g00001 Gabi-Chr4238 3080 7961 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4238g00001 7 799 U-box Gene Family AT3G54790 53.509 0.0 727