Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4236g00066 ATGCCAGAATTGAGAAGTGGAGCTAGAAGGTCGAAACGGCTTGGAGAGCTTCAGCCTAGTCCACTACCTGTTGATCAAGGAGAGAATTGGGTACAACCTGCTCAGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGCGGTAATGCCACAGCTGTAGGCAAAGGGCCTTCACCAGCTGTACCAACAAGGCGAACTGCAGCTGGTAGAGGCCGCGGAGCTAGATTAATTGATCTGGACCCTGAACCTTGTGAGGTCCTTCCAGAACCTGTTGCTCTAGGGGCTCCGGAACCCATTTACAATAACGTAGAGGTCGTGGCCAATAACAATATTGTGATGGAGGGTGGAAGTGCAGATAAGGTGGCAGCAGCTGAAGAAGAAGCAAGCCCAACTCCCGTCCCTGAAAGGGTACAAGTTGGTAACTCTCCTGTATATAAGATAGAAAGGAAATTGGGTAAGGGTGGCTTCGGCCAAGTTTATGTCGGCAGAAGGTTAAGTGGTGGCTCTGATCGAACAGGTCCTGACGCAATTGAGGTTGCACTTAAGTTTGAGCACAGAAACAGTAAAGGATGCAATTATGGGCCTCCTTATGAGTGGCAAGTATACAATACTCTGAATGGTTGTTATGGGATTCCCTGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCGATGTCACCAAGTATGGTTGCTTGCATTGCAGTGGAGTCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCATGGAGATGTAAAACCAGAAAACTTCTTGCTTGGTCAGCCTGGAACAGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTGGCTTCTAGATGGAAGGATGCATCATCTGGGCAACATGTTGAATATGATCAGAGACCGGATATATTCAGGGGAACGATAAGGTATGCTAGTGTACATGCACATTTAGGAAGGACTGGAAGTCGAAGGGATGATCTTGAGTCATTGGCATACACCTTAATATTTCTCATAAAAGGGAGATTACCGTGGCAGGGTTATCAGGGAGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGGCTACTTCTGCGGAGTTGATGTGCTGCTTTTGTCCCGCTCCATTTAGGCTGTTCCTTGAAGCTGTTACTAACATGAGATTCGATGAGGAGCCAAATTATGCCAAGCTCATATCACTTTTTGAAAGTTTGATTGAACCATGCACTCCATTAAGACCTATCAGAATTGATGGAGCTTTAAAGGTTGCTTTAATTGTTGGTCAAAAGCGGGGAAGGATGCTTATAAATCTGGAAGAAGATGAGCAGCCAAAGAAGAAAGTACGGTTGGGGAGTCCTGCTACTCAGTGGATATCTGTGTATAATGCACGTCGTCCCATGAAGCAGAGATATCACTATAATGTAGCGGACTCTAGGCTCCGGCAGCATGTAGACAAGGGTATTGAGGATGGGTTGTATATAAGCTGTGTGGCCTCTTCAACAAATCTGTGGGCTCTAATCATGGATGCTGGAACAGGTTTTTCTTCCCAGGTTTATGAGTTATCAGCTGCCTTCCTGCACAAGGATTGGATTATGGAGCAGTGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGAAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTACACACAGCAATCCTATAAAGTGAGTGAATCCTTTCCTTTCAAATGGATAAACAAGAAGTGGAAAGAAGGATTCCATGTTACCTCCATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCGGATCAGGTTGTGGAGCTGGACTTTTTGTATCCAAGTGAAGGAATCCATCGACGATGGGAGAGTGGTTACCGGATTACTTCTATGGCTGCTACTAATGATCAAGCAGCCTTCATACTGAGCATACCAAAACGCAAATTGCCTGATGAAACTCAAGAGACTCTACGTACATCTGCCTTCCCTAGCACCCATGTAAAGGAAAAATGGTCTAAGAATCTCTATATTGCCTCAATATGTTATGGGCGAACTGTTTGCTAG 2139 0.4469 MPELRSGARRSKRLGELQPSPLPVDQGENWVQPAQNRTRRRVGGGRGRGGNATAVGKGPSPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALGAPEPIYNNVEVVANNNIVMEGGSADKVAAAEEEASPTPVPERVQVGNSPVYKIERKLGKGGFGQVYVGRRLSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPSMVACIAVESISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMATSAELMCCFCPAPFRLFLEAVTNMRFDEEPNYAKLISLFESLIEPCTPLRPIRIDGALKVALIVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADSRLRQHVDKGIEDGLYISCVASSTNLWALIMDAGTGFSSQVYELSAAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATNDQAAFILSIPKRKLPDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4236g00066 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Gabi4236g00066 712 FunFam Casein kinase 1-like protein 119 471 - -
Gabi4236g00066 712 Gene3D Transferase(Phosphotransferase) domain 1 110 466 - -
Gabi4236g00066 712 SMART serkin_6 147 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4236g00066 712 PANTHER CASEIN KINASE-RELATED 147 682 - -
Gabi4236g00066 712 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Gabi4236g00066 712 Pfam Protein kinase domain 147 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4236g00066 712 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4236g00066 712 CDD STKc_CK1 147 421 - -
Gabi4236g00066 712 SUPERFAMILY Protein kinase-like (PK-like) 147 435 IPR011009 -
Gabi4236g00066 712 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4236g00066 Gabi-Chr4236 745979 752803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4236g00066 121 307 EF-hand Containing Proteins AT5G66210 27.041 1.43e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Gabi4236g00066 Pkinase 1.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4236g00066 - - gmx:100801967 1352.42