Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4236g00047 ATGGAAATTCATTTCCAACAACCAAACCTGCAGCATCAGAAAGCAAGCATTTCAGTCACAAAAGGAGGCAAATTCAAAGGGAGAAATAGAAACAGCAACACAAACAAATTTGTTGGTGTGAGACAAAGGCCTTCAGGGAGATGGGTAGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCAGAAGAAGCAGCAAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCCAACACTCGCACCAACTTCATCACTAATGTCTCATTGGATTCTCCTCTTGCTTCTCGGATTCGAAATCTTCTTAACAACAAAAAAGGTGTCAAACAACAAGAAGATGTTGTTGTTGATGCATCTTCCTCCTCAAGAGTTAGCACTTCTAGCAGCAGTGTTAGCAATACTAGTAGTGATTCAAGCAATAATGACAACAATAATAACAACAACAACTCTCTTCTTTCTAGTGAGACAACTCAGAACACTAAGCTGTTTGATGATGCATATAAGCCAGACTTGAGCAATTGCAGGGAGGACTTTGAGTCATGTCCTCAATCCAATGTTTCATGGGGTTTTGGATCTGTCTTTGATCGTTTTCCTATTGCTCATGTATTGGATATACCTAAGATTGATGGCTTGACTGATACTGTTGACTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATTTCTGCTTCACTTTATGCAATTAATGGAGTGCATGAGTACATGGAAACTGTTCAGGACTCCAATGAAGCTCTATGGGATCTTCCACCCTTATGCTCATTGTTCTGTTGA 825 0.3988 MEIHFQQPNLQHQKASISVTKGGKFKGRNRNSNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITNVSLDSPLASRIRNLLNNKKGVKQQEDVVVDASSSSRVSTSSSSVSNTSSDSSNNDNNNNNNNSLLSSETTQNTKLFDDAYKPDLSNCREDFESCPQSNVSWGFGSVFDRFPIAHVLDIPKIDGLTDTVDLELSEFERMKVERQISASLYAINGVHEYMETVQDSNEALWDLPPLCSLFC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4236g00047 274 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 MobiDBLite consensus disorder prediction 120 161 - -
Gabi4236g00047 274 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 Gene3D AP2/ERF domain 35 94 IPR036955 GO:0003700|GO:0006355
Gabi4236g00047 274 FunFam ethylene-responsive transcription factor RAP2-11 35 94 - -
Gabi4236g00047 274 SMART rav1_2 36 100 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 MobiDBLite consensus disorder prediction 122 161 - -
Gabi4236g00047 274 CDD AP2 36 92 IPR001471 GO:0003700|GO:0006355
Gabi4236g00047 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 240 - -
Gabi4236g00047 274 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4236g00047 Gabi-Chr4236 611508 612332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4236g00047 10 274 AP2-EREBP Transcription Factor Family AT5G19790 42.446 2.61e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4236g00047 AP2 6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4236g00047 K09286 - gmx:100796898 399.053