Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4236g00024 ATGGCACCTCCTCCTTCTTCTTCTTATGCTGCTGTTTCATTTCATCCCAAAATTTATGATGTTTTCATTAGCTTTAGAGGTGAGGACACTCAGAGCAACTTCACAAGCCACCTTCGTTCTGCTATTTGTCAAAAGCAGATCGAAGTATACATGGATGACGAAATGAAGAGAGGAGATGAGATCTCACCAGCACTTATCAAAGCAATTGAAGATTCATACATATCGGTCATCGTTTTCTCAGAAGATTATGCTTCCTCAAAGTGGTGCTTGGATGAACTCCTTAAAATACTCGAATGCAGGAACAAGGGACAGGATGTGATACCTGTCTTCTATAAAATTGACCCATCAAATGTGCGGAACCAGAGAGGGAGTTACAAGAAAGCCTTCAAAAAACACAAGAGAGATTTCAGCGAAGACAAGTTGAGCAAGTGGAAACAAGCTCTGTTTGAAGCAGCCAATCTAGCTGGGTGGGACTCTAGAAAATACGGGGACGAACAGACACTAATTCAAAAGATTGTCGAAGAGGTTTTGGAAAAATTGGAATCCAAGTACCCACCAAGGGAATCAAAATGCCCTTTTGGGACCGATGAAAACCTTGCACCTATTGAATCATTATTAAGAGAATTTCAAATCATTGGAATTTGGGGCATGGGTGGCATAGGTAAAACCACCATTGCTAAATGGTTATTTGGCAAATACTCTTCTCAATATGAAGGATCGTGTTTTATGGAAAATATAAGGGAAAATTTTGAAAAAGATAAACACGCACTACGCAATGATCTCGTTTCCAAGCTTCTAGAGGAATATGAGAGAAAAATCAATGTGGAATCCGTTGTTGTTAAGAGAAGGCTTTCTCGTAAAAGAGTTTTCGTTGTGCTTGATGATGTGAGTTCTTCAAAGCAATTAGAATATCTGGATGGAGAACTTCAATGCTTTGGATCAGGTAGTAGAATCATCATTACATCCAGAAACATGCATGTCCTCCTCTGGAAAGGAGTTGATGAAATAAAAATACATCATGTTAAGGAATTGAACCCAAAGGATTCCCTGCAACTTTTCAGCTTGAATGCCTTCAAACACAACCATCCTTTAACGGGATACGAAGTGTTATCAAATAGAGCAATTGCTTATGCTAAAGGCTTGCCATTAGTCTTAAAGGTTGTAGGTTGTTTTCTTCATTCAAAAACTAAAAATGAATGGGAAAGTGAACTACAAAAATTAAAAAGGATTCCCGATGATGAAATTCAAAGTAAGTTACAATTGAGCTATGAAGGATTAGATGATCAAGAGAAGGACATATTTCTAGACATTGCATGCTTTTTGAAGGGAAAACGTGAAGAGCATGTCGTGAGCCTGTTAAATGACTTCAATCCCCGTATTGGCTTAAGAAATCTTCAAGATAATGCTCTTATAACTATAGAGCATGATTTCGTAAAGATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGTCAAGAATCTATCAAAGATCCTGGAAAACGCAGCCGATTGTGGGATCCAGAGGACGTCTATGATGTATTGAAATATAACAGGGGAACTGATAAAGTTGAAGGCATAAATTTAGATATGTCCCAAATCAGAGATCTATGTTTGAGTGTTGACACATTCAGAAACATGATTAATCTAAGATATCTGAAATTATATTTGCCGTATGGTGTTAGAGATTGTAGTATGTTGTCCCTTGCTGCAGGTGTCCAATTATTTTCTAATCAATTAAGGTATCTCGCGTGGGATAGATACCTTTCAAAGTCTCTTCCATTAATGTTTTGTACGGAAAAGCTTGTTGAGCTTTCAATGCCAGACAACCACCTTGAGAAGCTTTGGGATGGAGTGCAGGATTTGGTGAATCTAAAGAGAATAAACCTTCGTGGATCCACAAGGTTAATGGAACTCCCAGATTTCTCTATGTCGACAAATCTTGAAACAGTAGAGCTCTCCGATTGTGTAAGTTTGTGTCATATTCATCCATCTGTGTTATCTATCCACTCGCTTGTTACTTTGCGGTTATCTCGGTGCAAAAGTTTGATCAGTCTTGAAAGTGAGATTCACTTAAAATCTCTTGAATTTCTTTTCTTTGATGACTGCTCAAGCCTCAAGAAATTTTCGGTGTCGTCGGAGGAAATTAGAGAATTGAATTTCTGGTGCACAAGCATTGAAATATTGTCTTCAGCTATTAATCATCTCAGGAGACTTGAAAGTCTCACACTCGATGGCTCAAAACTTGAGAAACTTCCAGATGGGTTATCAGGTTTGAGAAATCTTAAAAGACTCTTCATTTACAATTGCCCCAAACTAAGGATTTACGAACAAGAGCTACGTAACATTTTTGATGGCTTGCAGTCCTTAACACATCTTTGTTTGAACGTGGGAAGTGACTTTTCTGAGTTACCTGACAACATTAGTGTATTATCATTGTTGCACTCATTAGATCTAAGCAGAAGCAATATCAAGTGTTTGCCTGGAAACATAAAGCAACTTACAAAGCTGAGAGTTCTTCGCTTAAGAGATTGCAAGAGGCTTGAGTCTCTCCCAGAGCTTCCACAATTCATTACACATTTGGATCTAAGCGGAAGCAATATCATGTGTTTGCCTGGAAACATAAAGCAACTTACAAAGCTGAGCTTTCTTGATTTAAGTCATTGCAAGAGGCTTGAGTCTTTCCCAGAGCTTCCACTATCAATAACAAAGTTACATCTTGAAGGAAACAATATTGAGAGTTTGCCTAACAGAATCAGGGAAAATATAAATTTAAGACATCTTGAGTTAAGTGAATGCAAGAGTCTTCGATCTCTTCAATGGCTTCCACAATCAATTGAACTTTTAGATGCCACTAACCGTGATTTATTGTGGGATTTACTGAAAATATTTTATTTTGGAAATTGCATGAACTGGGATGAAGATTCAATTTCCTCTATTTTGGGAAAGGCCGTCAAAATTCACTTTCCAGAATGCTCCAGAGATAATTGGACACCAAGGAATTTCATGACTATTAAACTTGATCGACCTGCAGAGATAGTGACTTATGTTTTCTGTGTAGTACTTTCTCCGTTCTCCTCCAATCAAGGTAAAGGCACTTTTTCTATCAGATGCTATCAAGATGTTAACACACATCGAAATATGTACTCTGCATCTCTTAAACCTATCAGAGGATTTATTGGTTTGAAATGGAAAGCTACTAGAGAATTGAATTCTGATTATGTTTACGTATGGTGTCAATCAGTTGATTACTTTCCCAAACAAAGTGCCACTTGCAACTCATCATTCAAATTCGTTGTTGAAAGTAATCGAAATGGTGAGCCACATCCCGATATCACAATCAAAGAGTGTGGAGTGTGCCCAATATATACTTTTTACAAAGCTTCTTAG 3393 0.3778 MAPPPSSSYAAVSFHPKIYDVFISFRGEDTQSNFTSHLRSAICQKQIEVYMDDEMKRGDEISPALIKAIEDSYISVIVFSEDYASSKWCLDELLKILECRNKGQDVIPVFYKIDPSNVRNQRGSYKKAFKKHKRDFSEDKLSKWKQALFEAANLAGWDSRKYGDEQTLIQKIVEEVLEKLESKYPPRESKCPFGTDENLAPIESLLREFQIIGIWGMGGIGKTTIAKWLFGKYSSQYEGSCFMENIRENFEKDKHALRNDLVSKLLEEYERKINVESVVVKRRLSRKRVFVVLDDVSSSKQLEYLDGELQCFGSGSRIIITSRNMHVLLWKGVDEIKIHHVKELNPKDSLQLFSLNAFKHNHPLTGYEVLSNRAIAYAKGLPLVLKVVGCFLHSKTKNEWESELQKLKRIPDDEIQSKLQLSYEGLDDQEKDIFLDIACFLKGKREEHVVSLLNDFNPRIGLRNLQDNALITIEHDFVKMHDLIQEMGREIVRQESIKDPGKRSRLWDPEDVYDVLKYNRGTDKVEGINLDMSQIRDLCLSVDTFRNMINLRYLKLYLPYGVRDCSMLSLAAGVQLFSNQLRYLAWDRYLSKSLPLMFCTEKLVELSMPDNHLEKLWDGVQDLVNLKRINLRGSTRLMELPDFSMSTNLETVELSDCVSLCHIHPSVLSIHSLVTLRLSRCKSLISLESEIHLKSLEFLFFDDCSSLKKFSVSSEEIRELNFWCTSIEILSSAINHLRRLESLTLDGSKLEKLPDGLSGLRNLKRLFIYNCPKLRIYEQELRNIFDGLQSLTHLCLNVGSDFSELPDNISVLSLLHSLDLSRSNIKCLPGNIKQLTKLRVLRLRDCKRLESLPELPQFITHLDLSGSNIMCLPGNIKQLTKLSFLDLSHCKRLESFPELPLSITKLHLEGNNIESLPNRIRENINLRHLELSECKSLRSLQWLPQSIELLDATNRDLLWDLLKIFYFGNCMNWDEDSISSILGKAVKIHFPECSRDNWTPRNFMTIKLDRPAEIVTYVFCVVLSPFSSNQGKGTFSIRCYQDVNTHRNMYSASLKPIRGFIGLKWKATRELNSDYVYVWCQSVDYFPKQSATCNSSFKFVVESNRNGEPHPDITIKECGVCPIYTFYKAS 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4236g00024 1130 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 711 IPR044974 GO:0006952
Gabi4236g00024 1130 PRINTS Disease resistance protein signature 283 297 - -
Gabi4236g00024 1130 PRINTS Disease resistance protein signature 378 392 - -
Gabi4236g00024 1130 PRINTS Disease resistance protein signature 877 893 - -
Gabi4236g00024 1130 PRINTS Disease resistance protein signature 211 226 - -
Gabi4236g00024 1130 SMART till_3 18 154 IPR000157 GO:0007165
Gabi4236g00024 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 437 IPR027417 -
Gabi4236g00024 1130 Pfam TIR domain 19 189 IPR000157 GO:0007165
Gabi4236g00024 1130 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 157 IPR035897 -
Gabi4236g00024 1130 SMART LRR_typ_2 899 923 IPR003591 -
Gabi4236g00024 1130 SMART LRR_typ_2 737 760 IPR003591 -
Gabi4236g00024 1130 SMART LRR_typ_2 812 835 IPR003591 -
Gabi4236g00024 1130 Pfam Leucine Rich Repeat 602 621 IPR011713 -
Gabi4236g00024 1130 Gene3D Ribonuclease Inhibitor 716 905 IPR032675 -
Gabi4236g00024 1130 Gene3D Ribonuclease Inhibitor 519 715 IPR032675 -
Gabi4236g00024 1130 Gene3D - 343 427 IPR042197 -
Gabi4236g00024 1130 ProSiteProfiles TIR domain profile. 17 180 IPR000157 GO:0007165
Gabi4236g00024 1130 SUPERFAMILY RNI-like 605 962 - -
Gabi4236g00024 1130 Pfam NB-ARC domain 206 417 IPR002182 GO:0043531
Gabi4236g00024 1130 Gene3D - 14 179 IPR035897 -
Gabi4236g00024 1130 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 182 - -
Gabi4236g00024 1130 Gene3D - 180 333 IPR027417 -
Gabi4236g00024 1130 SUPERFAMILY "Winged helix" DNA-binding domain 413 517 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4236g00024 Gabi-Chr4236 259713 264481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4236g00024 17 848 WRKY Transcription Factor Family AT4G12020 33.372 3.79e-102 353