Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4236g00007 ATGGCAAATAGATGCCATCCCTTAGTGTTTCTGGTGTTGGTTACTATTTTACTTTCTATCTATCGTTCGGAGCAACTTCAATCTTCCCAATCTCAGACCCTTCTGAGAATTCAGCAGTTATTGAACTTTCCTGCAGCATTAAGAAATTGGAATAACAGCACAGACTTTTGCAGCACAGATTCAAACTCTTCTCTCACTGTAGAATGCTATGAAGACACCATAACTCAACTGCACATAATAGGTGAAAGAAGAGCTCCACTTCTCCCTGGAAATTTCTCAATAGATTCCTTAGTCACAACACTGGTAAGGCTTCCCAGTTTGAAAGTACTCACACTCGTTTCTCTTGGTATATGGGGTCCTTTGCCTAGTAAGATTGGTCGTCTGTCATCACTGGAAATAGTTAATGTGAGTTCGAATTCTCTATATGGTTCCATTCCTCCAGAACTTTCATCACTGTCAAATCTCCAAACACTCATTCTTGACAACAACATGTTTGCTGGCAAGCTTCCTGATTGGCTTGATACACTTCCAGCCTTAACTGTGTTGAGTTTGAAAAACAATTTGTTGAATGGTTCTCTACCAAATTCGCTCGGTAACTTGGAGAATTTGAGAATTCTTTCACTTTCCCATAATCACTTTTATGGGGTAGTACCTGATTTGAGCCGTTTGACAAATCTTCAAGTGCTGGAATTGGATGATAATGCTTTTGGACCTCAGTTTCCGCGGCTTGGTAAAAAGTTGGTTGCTCTTGTGCTAAGAAATAATAGGTTCAGGTCTGGTATTCCTGCTGAATTGAGCTCATATTATCAGCTTGAGAGATTGGATATCTCATCAAATACATTTGTGGGGCCATTTCAGCCAGCATTGTTATCACTTCCTTCTATTTCTTATATGAACATTTCTGGGAACAAATTAACTGGGATGCTTTTTGAGAATCTGTCTTGCAATTCCGAGCTTGATGTTGTTGATTTATCCTCAAACCTTTTGACTGGGAGCTTACCTAGATGTTTACTGTCAAATTCCAGTGATAGGATTGTCCTGTATGCTAGAAATTGTCTAGAGAAAGCGAATCAAAATCAGAACCCTCCTCCCTTTTGCCACAACGAAGCCTTAGCTGTGGGAATATTACCTGACAGAAAGAAGCACAAACAAGTATCTAAGGTAGTTCTTTCCCTTGGCATAGTAGGTGGAGCTCTTGGAGGAGTAGCACTTGTTTTGCTGATTTTCTTTATTGTTAGAAGAGGAAATGCCAAAAGCAAAATGAAGAATCCTCCAACAAGATTAATATCAGAGAATGCAGCTTCTGGATATACCTCTAAGTTGCTTTCTGATGCAAGGTATATATCTCAAACAAAGAAGTTTGGAGCGGTTGGCTTGCCAACTTATCGAAGTTTCTCATTGGAAGATATTCAGGCAGCTACAAACAACTTTGACACAGCTTCTTTAGTGGGTGAAGATTCTTATGGGCAGATGTACAGAGGTCAACTGAAGAATGGCACGTTTGTTCTTATTAGATGTGTAAAAATGAAAAGAAGATATAGCACACAAAATTTTATGCATCACATAGAGCTGATATCAAAACTTAGGCATCGTCATTTAGTCAGCGCTCTTGGACATTGCTTTGAATGTTCTTTAGATGATTCAAGTGTCAGCAGAATATTTCTTGTCTTCGAATACGTGTCAAATGGAACACTCAGGAGCTGGATTTCTGATGGGCATGCTAGAAAATCACTGAGTTGGACCCAACGCATAGGAGCTGCAATTGAAGTAGCAAAGGGAATCCAATTTTTGCATACAGGGATTGTCCCTGGTGTATATTCCAACGATCTTAAGATAGAAGATGTTTTGTTGGATCAGAATCTTGTTGCAAAAATCAGCAGTTATAACCTGCCTTTGTTATCTAACATGGGAAAGGTTCGGCATGGAAGTTCTTCCAATGGATTAAAAAATTCTAGCATTAATATAAGGGTAAAACATGAAGATAAGTCTGATATGTACGACTTTGGAGTAATACTGCTGGAACTCATTCTAGGAAGGGCAATAAAGTCAACGAATGATGCAGACGCTTTTAAGGATCTGTTGCAAGCAAGCATAGTAGCTGATGATGAGGCTAGGAGGAGAATTGTTGATGTTGAAGTTCGGAAGACATGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGCGTGAGGTGCCTGGTTAAAGAGCCAGCAGATAGGCCTTCTATAGAGGATGTGTTGTGGAATTTGCAATTTGCTGCTCAAGTACAAGATGCATGGAGAGGGGATTCATTTAGTAATTCTCACAGTAGTGAGGGGTCACCACCAGCCTCACCTCAAAGACTTGCCTTCCTTTAG 2358 0.3982 MANRCHPLVFLVLVTILLSIYRSEQLQSSQSQTLLRIQQLLNFPAALRNWNNSTDFCSTDSNSSLTVECYEDTITQLHIIGERRAPLLPGNFSIDSLVTTLVRLPSLKVLTLVSLGIWGPLPSKIGRLSSLEIVNVSSNSLYGSIPPELSSLSNLQTLILDNNMFAGKLPDWLDTLPALTVLSLKNNLLNGSLPNSLGNLENLRILSLSHNHFYGVVPDLSRLTNLQVLELDDNAFGPQFPRLGKKLVALVLRNNRFRSGIPAELSSYYQLERLDISSNTFVGPFQPALLSLPSISYMNISGNKLTGMLFENLSCNSELDVVDLSSNLLTGSLPRCLLSNSSDRIVLYARNCLEKANQNQNPPPFCHNEALAVGILPDRKKHKQVSKVVLSLGIVGGALGGVALVLLIFFIVRRGNAKSKMKNPPTRLISENAASGYTSKLLSDARYISQTKKFGAVGLPTYRSFSLEDIQAATNNFDTASLVGEDSYGQMYRGQLKNGTFVLIRCVKMKRRYSTQNFMHHIELISKLRHRHLVSALGHCFECSLDDSSVSRIFLVFEYVSNGTLRSWISDGHARKSLSWTQRIGAAIEVAKGIQFLHTGIVPGVYSNDLKIEDVLLDQNLVAKISSYNLPLLSNMGKVRHGSSSNGLKNSSINIRVKHEDKSDMYDFGVILLELILGRAIKSTNDADAFKDLLQASIVADDEARRRIVDVEVRKTCLDQSLKTMMEICVRCLVKEPADRPSIEDVLWNLQFAAQVQDAWRGDSFSNSHSSEGSPPASPQRLAFL 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4236g00007 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 560 766 - -
Gabi4236g00007 785 Gene3D Transferase(Phosphotransferase) domain 1 560 767 - -
Gabi4236g00007 785 Pfam Leucine rich repeat 170 213 IPR001611 GO:0005515
Gabi4236g00007 785 MobiDBLite consensus disorder prediction 763 785 - -
Gabi4236g00007 785 Gene3D Phosphorylase Kinase; domain 1 440 559 - -
Gabi4236g00007 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 27 244 - -
Gabi4236g00007 785 Gene3D Ribonuclease Inhibitor 244 360 IPR032675 -
Gabi4236g00007 785 Gene3D Ribonuclease Inhibitor 27 243 IPR032675 -
Gabi4236g00007 785 SUPERFAMILY L domain-like 50 353 - -
Gabi4236g00007 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 450 559 - -
Gabi4236g00007 785 SUPERFAMILY Protein kinase-like (PK-like) 459 752 IPR011009 -
Gabi4236g00007 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase isoform A 245 362 - -
Gabi4236g00007 785 Pfam Protein tyrosine and serine/threonine kinase 481 747 IPR001245 GO:0004672|GO:0006468
Gabi4236g00007 785 ProSiteProfiles Protein kinase domain profile. 477 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4236g00007 785 SMART LRR_typ_2 176 199 IPR003591 -
Gabi4236g00007 785 SMART LRR_typ_2 128 152 IPR003591 -
Gabi4236g00007 785 SMART LRR_typ_2 200 223 IPR003591 -
Gabi4236g00007 785 MobiDBLite consensus disorder prediction 763 777 - -
Gabi4236g00007 785 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Gabi4236g00007 785 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 84 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4236g00007 Gabi-Chr4236 112395 118548 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4236g00007 43 782 Miscellaneous Gene Families AT3G03770 62.651 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Gabi4236g00007 PK_Tyr_Ser-Thr 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4236g00007 - - gmx:100807539 1242.64