Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4236g00004 ATGGCTGAGCCACAAGTTGGTGATCATGGCACTTCAGCAACAACAACAACAAGGTGTAAAGGCAGGGCTTCAAAGCGTGCCATGGCAGCACCGACGGAGGCAGCAGCGGCTCCATGTGGGGCTTGCAAGTTCCTTAGGAGAAAGTGCATTAGTGGATGCATCTTTGCACCTTACTTTGGTTCTGACCAGGGTGCAGCAAGGTTTGCGGCGGTTCACAAAGTGTTTGGTGCAAGCAATGTGTCAAAGCTATTGTTGCATATTCCGGCGAACCGCCGCCAAGAAGCGGTGGTTACTATATCTTATGAGGCTCAGGCAAGGTTGTCTGATCCTGTTTATGGTTGTGTGTCCACTATTCTTGCTTTGCAGCAACAGGTGGCATGTTTGCAAGGGGAGCTTGCTATGGTTCAAAATCAGCTGATGAATAGTAGATTTGCATTTGCAAGTGCTCTTCAAAGCACTCATCAGCAGCAGCAGCAGCAACAACAACCAAACATCAATTTAGCAATGCAGCCAGCTTATTCCAACAATTCATCTGCTTCTGCCAACCTTATGAACATGAACTGCTTCAACCCTGGTTATGACCTTGCAATGGAGACAGCACCCTCATCTTATAGCTTCGAGCCTCTTCAACTCTCAAGGCTGTCCCAGGATGAGGAAGATGATGAAGAAGAAAGTAGGATTCCCCAAGTGTTCAACCATGAGATAGTACTTCACCGTCACTGA 723 0.4772 MAEPQVGDHGTSATTTTRCKGRASKRAMAAPTEAAAAPCGACKFLRRKCISGCIFAPYFGSDQGAARFAAVHKVFGASNVSKLLLHIPANRRQEAVVTISYEAQARLSDPVYGCVSTILALQQQVACLQGELAMVQNQLMNSRFAFASALQSTHQQQQQQQQPNINLAMQPAYSNNSSASANLMNMNCFNPGYDLAMETAPSSYSFEPLQLSRLSQDEEDDEEESRIPQVFNHEIVLHRH 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4236g00004 240 Pfam Lateral organ boundaries (LOB) domain 38 136 IPR004883 -
Gabi4236g00004 240 Coils Coil 118 138 - -
Gabi4236g00004 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 210 - -
Gabi4236g00004 240 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4236g00004 240 ProSiteProfiles LOB domain profile. 37 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4236g00004 Gabi-Chr4236 98431 100470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4236g00004 37 225 AS2 family AT3G03760 64.824 9.60e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi4236g00004 LOB 2.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4236g00004 - - qsa:O6P43_006215 309.686