Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4234g00006 ATGGCTCATCAAGAAAACTGCACGCGCCCTCAGCGCGAAGCCAAGAAAAGAGCTGCAGCTGCAATTTCCGAACTTCAGGGTGCTGCCAAGAAGAAAAGGGTCGCGTTAGGGGACCTCACCAACTTGTCCAATGATGTTGTTGCCCCTATTCAGAACGAGAAAAAGAGAAATGTCGGAAAACCAAAGCCAACGGCGGCGCCGGCGGCGAAGCCGATGCCGGAAAAGTCGGATGATCCCCAAATGTGCGAGCCTTATGTTTCTGATATTTACGAGTACCTTCGCAAGTTGGAGGTGGAGCCTAGTAAAAGACCGTTGCCTGATTATGTTCAGAAAGTTCAGAAGGACATTAATGCTAACATGAGGGGTGTTCTGGTGGATTGGTTGGTTGAGGTTGCTGAAGAATACAAGCTTGTTTCCGACACACTTTATTTATCTGTTTCTTATATCGATAGGTTTCTCTCTTCGAATTCTCTTTCTAAACAGAAGTTGCAATTACTTGGGGTCTCTTCCATGCGGATTGCTTCAAAATACGAGGAGATCAAGCCACCTGAAGTGGAGGACTTCTGTTACATCACGGACAACACATACTCCAAGGAAGAGGTTCTGGCAATGGAAGCTGATATATTGAAGTCCTTGAAATTTGAAATGGGCGGTCCTACAGTTAAGACATTTCTAAGGAGATTCTCTAGAGTTGCTCAACAGAGTGGTGATATTTTGGAGCTGCATTTTGAGTTCCTTAGCTACTATCTGGCCGATCTTAGTTTGTTGGATTATAATTGTGTGAAGTTCTTGCCTTCTTTGGTAGCTGCGTCTGTTGTCTTTCTAGCAAGATTTATCTTAAACCCTAAGACACATCCTTGGAATTCAGCACTCTATCAGCTCACTAGATATAGACCTGGTGATCTTAAGGAATGTGTCCTTAACATACATGACTTGTACCTCAGTAGGAGAGGAGGCTCTTTGCAAGCTGTGAGAGAGAAATACAAGCAGCATAAGTTCAAATGCGTGGCAACAACACCCTATCCTCTAGAGATACCTCTCTCCTTTTTTGAATTTAGAGGGACGGGTCATTAA 1074 0.4423 MAHQENCTRPQREAKKRAAAAISELQGAAKKKRVALGDLTNLSNDVVAPIQNEKKRNVGKPKPTAAPAAKPMPEKSDDPQMCEPYVSDIYEYLRKLEVEPSKRPLPDYVQKVQKDINANMRGVLVDWLVEVAEEYKLVSDTLYLSVSYIDRFLSSNSLSKQKLQLLGVSSMRIASKYEEIKPPEVEDFCYITDNTYSKEEVLAMEADILKSLKFEMGGPTVKTFLRRFSRVAQQSGDILELHFEFLSYYLADLSLLDYNCVKFLPSLVAASVVFLARFILNPKTHPWNSALYQLTRYRPGDLKECVLNIHDLYLSRRGGSLQAVREKYKQHKFKCVATTPYPLEIPLSFFEFRGTGH 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4234g00006 357 SUPERFAMILY Cyclin-like 77 216 IPR036915 -
Gabi4234g00006 357 PIRSF Cyclin_A_B_D_E 1 345 IPR046965 GO:0016538|GO:0044772
Gabi4234g00006 357 Gene3D - 88 338 - -
Gabi4234g00006 357 MobiDBLite consensus disorder prediction 48 80 - -
Gabi4234g00006 357 SMART cyclin_7 223 311 IPR013763 -
Gabi4234g00006 357 SMART cyclin_7 126 210 IPR013763 -
Gabi4234g00006 357 FunFam Cyclin A1 206 338 - -
Gabi4234g00006 357 CDD CYCLIN_AtCycA_like_rpt1 78 215 - -
Gabi4234g00006 357 Pfam Cyclin, N-terminal domain 88 216 IPR006671 -
Gabi4234g00006 357 SMART Cyclin_C_2 219 342 IPR004367 -
Gabi4234g00006 357 SUPERFAMILY Cyclin-like 219 342 IPR036915 -
Gabi4234g00006 357 Gene3D - 104 217 - -
Gabi4234g00006 357 FunFam Mitotic cyclin 6 104 204 - -
Gabi4234g00006 357 CDD CYCLIN_AtCycA-like_rpt2 219 333 - -
Gabi4234g00006 357 PANTHER CYCLINS 60 336 IPR039361 -
Gabi4234g00006 357 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
Gabi4234g00006 357 Pfam Cyclin, C-terminal domain 219 340 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4234g00006 Gabi-Chr4234 34756 37325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4234g00006 3 351 Core Cell Cycle Gene Families AT5G43080 61.143 2.61e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4234g00006 K06627 - gmx:100801988 515.768