Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4230g00007 ATGTCAGGGGAAGAAGTTGAAGTTCCTGTTGCTGTTGCAGCTGAGCCAGCTGCTGCTGCTATTCCAGGTGAACCCATGGACATCATGACTGCCTTACAGCTTGTGCTTAGAAAATCATTGGCTTATGGTGGTCTTTCGAGAGGTCTTCACGAAAGTGCGAAAGTGATTGAGAAGCATTCTGCTCAGCTCTGTGTTCTAGCAGAAGATTGTGACCAACCTGATTATGTCAAACTGGTGAAAGCTCTTTGTGCAGAGCACAATGTTAGCCTGTTGACAGTTCCAAATGCTAAGACTCTTGGAGAATGGGCTGGTTTGTGCAAAATTGATTCAGAAGGAAAAGCTAGGAAGGTAACCGGTTGCTCCTGCGTGGTTGTCAAGGATTTCGGGGAGGAACATGAAGCCTATAACGTTGTTCTGCAGCATGTGAAATCTAACTGA 438 0.4589 MSGEEVEVPVAVAAEPAAAAIPGEPMDIMTALQLVLRKSLAYGGLSRGLHESAKVIEKHSAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPNAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4230g00007 145 ProSitePatterns Ribosomal protein S12e signature. 31 49 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4230g00007 145 SUPERFAMILY L30e-like 25 143 IPR029064 -
Gabi4230g00007 145 Gene3D - 12 145 IPR029064 -
Gabi4230g00007 145 PRINTS Ribosomal protein S12E family signature 49 65 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4230g00007 145 PRINTS Ribosomal protein S12E family signature 35 48 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4230g00007 145 PRINTS Ribosomal protein S12E family signature 90 111 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4230g00007 145 PRINTS Ribosomal protein S12E family signature 115 128 IPR000530 GO:0003735|GO:0005840|GO:0006412
Gabi4230g00007 145 FunFam 40S ribosomal protein S12 10 145 - -
Gabi4230g00007 145 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 31 124 IPR004038 -
Gabi4230g00007 145 PANTHER 40S RIBOSOMAL PROTEIN S12 19 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4230g00007 Gabi-Chr4230 66660 68631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4230g00007 1 145 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 69.655 4.80e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4230g00007 K02951 - gmx:100786733 254.988