Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4230g00005 ATGGACAATAATGAGGAAATTCCATCAGCACCATCAACACCTGCGACACCAGGTACTCCTGGTGCACCTCTTTTTGGTGGGTTTCGGTCTGAGAGAACCGGGAATGGTGTTGCTAAGAAGAAGTCTCTTCTCAAGAATTGTAAGTGCTTCAGTGTCGAAGAATGGACCTTAGAAGATGGAGTCTTACCAAGCGTCTCTTGCTCATTGCCACCACCTCCTGTTTCTCTTGCAAGAAAGGTAGGAGCTGAATTTATAGGCACGTTCATTCTCATGTTTGCTGGGACAGCCACAGCTATAGTGGACCAAAAAACACAAGGAACAGAGACTCTGATTGGATGTGCTGCCACTACTGGTCTTGCAGTTATGATAGTTATCCTCTCCACAGGCCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACCATTTCTTTTGCTGCATTAAAGCACTTCCCATGGAAACATGTACCTATGTATATTGGTGCACAAGTTTTGGCATCAATATGTGCTGCATTTGCTCTAAAGGGTATTTTTCACCCTTTCATGAGTGGTGGAGTCACCGTTCCTTCCGGAGGATATGGCCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTCAATCTCATGTTCGTTGTCACTGCTGTGGCCACCGACACCAGAGCTGTTGGAGAGCTCGCGGGAATCGCTGTGGGAGCGACTGTCATGCTCAACATCCTCATAGCAGGGCCAGTAACAGGAGGCTCAATGAACCCAGTAAGAACACTAGGTCCAGCTATTGCCGCAAACAACTACAAAGCCATATGGGTGTATCTGGTAGCTCCCGTACTTGGAGCTCTAGGTGGGGCGGGTACCTACACTGCAGTGAAGCTGCCCGAAGAAGATGAGAACGCCAAGGCAAATGCTTCAACCCCCAGGAGCTTCAGAAGGTGA 924 0.4838 MDNNEEIPSAPSTPATPGTPGAPLFGGFRSERTGNGVAKKKSLLKNCKCFSVEEWTLEDGVLPSVSCSLPPPPVSLARKVGAEFIGTFILMFAGTATAIVDQKTQGTETLIGCAATTGLAVMIVILSTGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAAFALKGIFHPFMSGGVTVPSGGYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVTGGSMNPVRTLGPAIAANNYKAIWVYLVAPVLGALGGAGTYTAVKLPEEDENAKANASTPRSFRR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4230g00005 307 CDD MIP 78 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 FunFam Aquaporin NIP2-1 66 298 - -
Gabi4230g00005 307 SUPERFAMILY Aquaporin-like 75 294 IPR023271 -
Gabi4230g00005 307 ProSitePatterns MIP family signature. 135 143 IPR022357 -
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 154 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 198 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 78 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 229 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 266 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PRINTS Major intrinsic protein family signature 117 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi4230g00005 307 PANTHER AQUAPORIN NIP2-1 41 292 IPR034294 -
Gabi4230g00005 307 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4230g00005 307 Gene3D Glycerol uptake facilitator protein. 72 300 IPR023271 -
Gabi4230g00005 307 Pfam Major intrinsic protein 75 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4230g00005 Gabi-Chr4230 49341 53383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4230g00005 3 307 Major Intrinsic Protein MIP AT1G80760 80.519 5.63e-174 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4230g00005 K09874 - gmx:100815637 475.707