Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4225g00003 ATGGTGATTGTGAACATTGGGAAGAAGAACGAGAAGGAGGTAACTCGACTTGGGAAATATGAGTTGGGTAGGACTCTTGGTGAAGGCAATTTTGGTAAAGTCAAGTTTGCTAGGAACACAGAATCTGGCCAACCTTTTGCCATTAAGATCATTGAGAAGAACAAGATCATCGATCTCAATATCACTGATCAGATAAAGAGGGAAATAGCCACCTTAAAGCTCCTCAAGCATCCCAATGTTGTTAGATTGTGCGAGGTCTCGGCTAGCAAAACAAAAATTTATATGGTACTTGAGTACGTGACTGGAGGGGAGTTATTTGACAAAATTGCATACAAGGGTAAACTTAACGAAGGTGAAGGTAGAAAGATGTTCCAACAGTTGATTGATGGTGTTAGCTACTGCCACAACAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTGCTTGTGGATGCCAAAGGGAACATAAAGATAACTGATTTTGGCCTTAGTGCTTTACCCCAGCATTTTAGGGCAGATGGATTGCTACATACAACTTGTGGAAGTCCAAACTATGTTGCACCGGAGATTCTTGCTAATAGGGGCTATGACGGTGCAACATCAGATGCATGGTCATGTGGTGTTATCTTGTATGTAATCCTAACAGGATACCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAAGGAGATGTTCAGATACCAAAATGGCTATCGCCTGGTGCACAAAACATGATAAAGAGGATTCTTGATCCCAACCCTGTGACCCGGATAACAATGGCTGGGATCAAAGAAGATCCATGGTTCAAGCAGGGCTACACTCCAGCAAATCCTGAGGATGAGGAAGAGGATGTATGTATTGACAATGAAGCCTTGTCCATCCATGAATTGCCACATCAAGAAGAACAGAGGAGTTCAGGATCACCTACCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCCGGCTTTTTTGAGACAGAGGATGTCTCTGAGAGGAAGATAAGATTTACATCCAACCTTACAGCTAAAGACCTGATCGAGAGGATTGAGGACAGTGTGACAGAAATGGGGTTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAATGATACAAGAGAACAAGGCGAATAAAACTCTTGGCAGCCTCTCAGTGGCAGTAGAGGTGCTTGAAATAAGACCATCATTATATGTAGTAGAATTAGGGAAGTCTAATGGAGATGCTTCTGTATATAGACAGCTATGCAATAAGTTATTGAATGATTTGGGTGTGCCCCCAAGGCAAGCGGTAGTGAGCTCAGAAGAAGAAGCCAGATAA 1350 0.4193 MVIVNIGKKNEKEVTRLGKYELGRTLGEGNFGKVKFARNTESGQPFAIKIIEKNKIIDLNITDQIKREIATLKLLKHPNVVRLCEVSASKTKIYMVLEYVTGGELFDKIAYKGKLNEGEGRKMFQQLIDGVSYCHNKGVFHRDLKLENVLVDAKGNIKITDFGLSALPQHFRADGLLHTTCGSPNYVAPEILANRGYDGATSDAWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPKWLSPGAQNMIKRILDPNPVTRITMAGIKEDPWFKQGYTPANPEDEEEDVCIDNEALSIHELPHQEEQRSSGSPTLINAFQLIGMSSCLDLSGFFETEDVSERKIRFTSNLTAKDLIERIEDSVTEMGFRVQKKNGKLKMIQENKANKTLGSLSVAVEVLEIRPSLYVVELGKSNGDASVYRQLCNKLLNDLGVPPRQAVVSSEEEAR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4225g00003 449 Pfam NAF domain 315 374 IPR004041 GO:0007165
Gabi4225g00003 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gabi4225g00003 449 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Gabi4225g00003 449 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Gabi4225g00003 449 CDD CIPK_C 319 430 - -
Gabi4225g00003 449 FunFam Non-specific serine/threonine protein kinase 315 436 - -
Gabi4225g00003 449 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
Gabi4225g00003 449 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4225g00003 449 SUPERFAMILY Protein kinase-like (PK-like) 17 315 IPR011009 -
Gabi4225g00003 449 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Gabi4225g00003 449 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 418 - -
Gabi4225g00003 449 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4225g00003 449 Gene3D Kinase associated domain 1, KA1 313 435 - -
Gabi4225g00003 449 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4225g00003 449 Gene3D Transferase(Phosphotransferase) domain 1 100 281 - -
Gabi4225g00003 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4225g00003 Gabi-Chr4225 14753 19815 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4225g00003 83 443 CBL-interacting serine-threonine protein kinases AT3G17510 71.350 2.11e-180 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4225g00003 Pkinase 1.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4225g00003 K07198 - gmx:100777468 741.11