Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4219g00002 GCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTAATACTCATAAGTTTTTTAAAGGTTATACTGAGGGAAGAACATATCAAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAAATCTTTTGCCTCGCCATTGTGATGAGTTTATTCGTTCCTTGCCATTTCAAGAGTACACTGATCCTGGGGCTGGAATTGTCAATCTTGCTGTAAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATACATTGCTTATGGGATTAAAGAAGAACTTGGTAGAGGAGACTCTGTAACAAAACTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACGGCCGAGGTGATATTAAGTGATGAGCAGCTCTCTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAAAGAACATTGTGCACAAGAGAGGATTGGTGAATGCCTGAATGGTGGACCTTGCAATAACAACAAAGAACATATAAAAGATAAGGAAGTCTTAGAACCTAAAGATATGGAGAAGCGCCCTTTTGAAATTAATGGGAAGATATTTCAAAATGATGTGTCTGAGGGGGTCATTTTTGCTGCTATTTCTCCAGAAAATGAACCAACGGAAACAGGTGGTGCCCTATGGGATATCTTTAGGAGAGATGATATTGAAAAGTTAGAAACATATTTAAGAAAACACTCAAAAGAATTTAGACATACTTATTGTTCTCCGGTTGAACAGGTTGTTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAAGAAGCTGAAGGAGGAGTTTGGTGTAGAACCCTGGACTTTTGAGCAGAAACTTGGGGAGGCTGTATTTATTCCTGCTGGATGCCCACATCAAGTGAGGAACCTCAAGTCATGCATAAAAGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTTCATGAGTGTCTGCGTTTAACTAATGAGTTCCGTCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTATATGCCGTTGATCAAGCTGTCAAAGACCTTCAAGCTTTTCTGGTGGCTGATACTATCAGTTGCTGTGAATAG 1143 0.3998 AIDCLANCEVEINTHKFFKGYTEGRTYQNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRSLPFQEYTDPGAGIVNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILSDEQLSIISKLKEAHKAQDEKEHCAQERIGECLNGGPCNNNKEHIKDKEVLEPKDMEKRPFEINGKIFQNDVSEGVIFAAISPENEPTETGGALWDIFRRDDIEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCIKVAVDFVSPENVHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLQAFLVADTISCCE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4219g00002 380 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 369 IPR045109 GO:0032454|GO:0033169
Gabi4219g00002 380 Gene3D Cupin 1 346 - -
Gabi4219g00002 380 ProSiteProfiles JmjC domain profile. 69 337 IPR003347 -
Gabi4219g00002 380 Pfam JmjC domain, hydroxylase 217 320 IPR003347 -
Gabi4219g00002 380 SMART cupin_9 50 337 IPR003347 -
Gabi4219g00002 380 SUPERFAMILY Clavaminate synthase-like 4 368 - -
Gabi4219g00002 380 FunFam Transcription factor jumonji (JmjC) domain-containing protein 146 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4219g00002 Gabi-Chr4219 77589 79992 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4219g00002 JmjC 8.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4219g00002 K15601 - gmx:100797860 650.588